Search Results for "alignment" - Page 11
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Showing 492 open source projects for "alignment"
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Web design in 4 minutes
Learn the basics of web design in 4 minutes
This repository contains a single, short tutorial that incrementally transforms a bare HTML document into a clean, readable webpage, teaching design by doing. Each step introduces one design decision—typography, spacing, color, alignment, hierarchy—and shows exactly how it changes the page. The lesson is intentionally minimal and time-boxed so beginners can grasp core principles without being overwhelmed by tooling or frameworks. It focuses on taste-building: why certain choices make text easier to scan, why rhythm and whitespace matter, and how contrast guides attention. ... -
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STAMP: Subtitling Add-In for PowerPoint
Provides ability to create captions in PowerPoint
The Subtitling Add-In for Microsoft PowerPoint (STAMP) helps Microsoft PowerPoint 2016, 2013 and 2010 users add closed captions to the video and audio files included in their presentations, which boosts their impact for those with hearing disabilities. -
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PARot polar aligner
Software for polar alignment of equatorial mounts
PARot is a program for ultra fast and precise polar alignment of equatorial mounts. You can easily achieve alignment accuracy better than 1 arcmin in 5 minutes of time. You take one image of the celestial pole, rotate the mount around the RA axis and take another image. The program compares the images and shows you the necessary adjustment. The adjustment process is controlled by the live-liew created by your camera. -
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arkwrt
A CLI tool for concepts defined in the ArchiMate® 2.1 specification
...The UNIX® philosophy favours composability as opposed to monolithic design (see https://en.wikipedia.org/wiki/Unix_philosophy). Go was selected as the implementation language because of its alignment with the UNIX philosophy and for fun. If you notice a problem with using the program, please report it via Tickets. Both UNIX® and ArchiMate® are registered trademarks of the Open Group. "But denunciatory rhetoric is so much easier and cheaper than good works, and proves a popular temptation. Yet is it far better to light the candle than to curse the darkness." -- William Lonsdale Watkinson -
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An open-source software aimed at unsupervised molecular alignment
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idwtree
Assigns orthologs using a phylogenetic tree
...The standard workflow idwtree was intended to analyze: 1. BLAST protein sequence of interest against organism(s) of interest. 2. Download all significant BLAST hits. 3. Build a multiple sequence alignment of BLAST hits with reference sequences (e.g. with CLUSTAL OMEGA or MAFFT). 4. Use the alignment to build a phylogenetic tree (e.g. with the PHYLIP package) 5. Use idwtree to assign BLAST hits to ortholog groups -
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Portable Robotics Eye Vergence Control
Eye movements control portable on different robotic stereo heads
This project provides a software module for the control of the binocular coordination of a robotic stereo head, based on a bio-inspired algorithm. The project is now available for the iCub platform to work on YARP [https://github.com/stino78/vergence-control/][1] The algorithm works on the top of a distributed representation of binocular disparity supplied by a population of binocular energy-model neural units. The project allows a robust control and adaptive binocular coordination... -
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The Lean Mean C++ Option Parser
A no-dependencies C++ program arguments parser
...It supports the short and long option formats of getopt(), getopt_long() and getopt_long_only() but has a more convenient interface. It is a freestanding, header-only library with no dependencies, not even libc or STL. It comes with a usage message formatter that supports column alignment and line wrapping, making it ideal for localized messages with different lengths. -
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Excel2LaTeX
The Excel add-in for creating LaTeX tables
Making tables in LaTeX can be tedious, especially if some columns are calculated. This converter allows you to write a table in Excel instead, and export the current selection as LaTeX markup which can be pasted into an existing LaTeX document, or exported to a file and included via the \input command. Known to be compatible with Windows Excel 2000–2016 (32-bit and 64-bit) and Mac Excel 2004, 2011, and 2016. May also be compatible with other versions that support .xla add-ins. Does not work... -
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myFSG
Create FSG report in Excel format at your desktop
...For mid-size companies which reluctant to buy third-party reporting tool, FSG is the only tool to create finance reports. Creating column set, row set, include or exclude ledger accounts, column alignment, etc drive many finance users crazy every day. Even a report is created, the Excel output still requires a lot of manual changes in order to meet usable standard. myFSG is a Java program which can be executed in any Windows platform that it connects to Oracle EBS database and generate FSG report in natve Excel format using highly customizable style template. ... -
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Genome Profiler
a wgMLST analysis tool for bacterial WGS data
...GeP uses conserved gene neighborhoods (CGN) to resolve gene paralogy. This approach allows the differentiation of orthologs from recently duplicated paralogs, which are often indistinguishable by pairwise sequence alignment. For more details, please see our publication: http://jcm.asm.org/content/53/5/1765.abstract Update 11th Sep. 2018: This project will stop updating at Sourceforge. Please download the latest version from: https://github.com/jizhang-nz Update 4th Oct. 2017: version: 2.1 bugs fixed. Update 8th Sep 2015: When using a multi-Fasta file of the the allele sequences (nt) as reference (switch -n), please use only CAPITAL letters A, T, G and C for the sequences. ... -
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...New project page: https://github.com/yesint/pteros New documentation page: https://yesint.github.io/pteros/ Pteros is the C++ library for custom molecular modeling and simulations codes designed for researchers, not for C++ gurus. Provides facilities for PDB, XTC and TRR files IO, powerful selections, geometry transformations, RMSD fitting and alignment, etc.
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local alignment 374
software for insertion in the local alignment for new combinations
This software is used to insert in the combinations of the proteins as it make with different types of bases as A ,T ,C etc and we take two combinations as the in put and find the alignment between them and then we enter a new element in the combination and find another combination with respect to it as there are lot of methods of having insertion use of one of these methods make this software . It is only university project so may be it is possible you to find an error in so just email it . -
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aeneas
Automagically synchronize audio and text (aka forced alignment)
aeneas is a Python/C library and a set of tools to automagically synchronize audio and text (aka forced alignment). aeneas automatically generates a synchronization map between a list of text fragments and an audio file containing the narration of the text. In computer science this task is known as (automatically computing a) forced alignment. -
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High Speed Parallel Imaging (HSPI)
HSPI does parallel capture and sky surveys.
HSPI offers to the astronomer the possibility to capture pictures from the CCD camera in a fast and intuitive way, keeping under control all the instrumentation in posses. HSPI can control the CCD camera, the mount, the focuser, the filter wheel and the dome from a single interface, and not only this: these features can be added on as many observatories and instrumentations you want. HSPI is ASCOM and INDI compatible, so if you want to use particular setups like Linux computers connected... -
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HMM-GRASPx
HMM Profile-based targeted assembly and alignment for metagenomics
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IPAS for protein sequences
multiple alignment algorithm for protein sequences
IPAS is a new and practial protein multiple sequence alignment algorithm based on iterative progresive alignment algorithm Assessed on BAliBASE 3.0, PREFAB 4.0, SABMARK 1.65, and OXBENCH, MSAProbs achieves the statistically highest alignment accuracy, compared to ClustalW 2.0.10, MAFFT 6.717( using L-INS-i with --maxiterate = 1000), MUSCLE 3.8.31, ProbCons 1.12, and Probalign 1.3. -
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...Assessed on BAliBASE 3.0, PREFAB 4.0,SABMARK 1.65, and OXBENCH, IPAS gives accurate alignment compared to the existing well known methods: T-Coffee, MUSCEL, and MAFFT.
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Gallop
A framework for build smooth asynchronous iOS APP
...You can easy to insert local images,web images or UIView object in the text. Easily add click and long press events to the text. Easily draw text frame bouding, drawing the hollow words, sets the text vertical Alignment property, etc Easy to parse the expression in the text, like http(s) link, @ user, # theme #, phone number. Fast to sets the image corner radius property and blur processing, can be processed directly after the image. -
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adapter trimmer
We implement a very simple approach. Each read is searched for the jun
...If a match to either side of the junction is found then the entire 38bp juncton is clipped. This means the algorithm can tolerate an indel error in one of the sides of the junction, but not both. Optionally Smith-Waterman alignment can be turned on with -w which resolves this issue, although the code is less tested. eg. this will be caught: CTGTCTCT-TA-TACACATCTAGATGTGTATAAGAGACAG but not this: CTGTCTCT-TA-TACACATCTAGATGT-GTATAAGAGACAG -
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SUPERmerge
ChIP-seq coverage island analysis algorithm for broad histone marks
SUPERmerge is a ChIP-seq read pileup analysis and annotation algorithm for investigating alignment (BAM) files of diffuse histone modification ChIP-seq datasets with broad chromatin domains at a single base pair resolution level. SUPERmerge allows flexible regulation of a variety of read pileup parameters, thereby revealing how read islands aggregate into areas of coverage across the genome and what annotation features they map to within individual biological replicates. -
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AKtoolbox
Matlab Toolbox for coevolution analysis of multiple sequence alignment
AK Toolbox is a Matlab Toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) distributed under Simplified BSD License. The aim of AK toolbox is to provide a set of Matlab functions, which are independent of Matlab Bioinforamtics Toolbox, for coevolution anaylsis for MSA. At present, co-evolution methods available in this package are Statistical Coupling Analysis (SCA), Explicit Likelihood of Subset Covariance (ELSC), Mutual Information (MI), Observed Minus Expected Square method (OMES), McLanhlan Based Substitution Correlation (MCBASC), Direct-coupling analysis (DCA) and logR. ... -
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SW#
smith waterman, gpu, cuda, alignment
SW# (swsharp) is a library for sequence alignment based on CUDA enabled GPUs. It utilizes Hirschbergs and Ukkonens algorithm for memory efficiency and additional speed up. The library is scalable for use with multiple GPUs. Some parts of the library utilize MPI for CUDA enabled clusters. This work has been supported in part by Croatian Science Foundation under the project UIP-11-2013-7353.