Search Results for "reference" - Page 2
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Showing 45 open source projects for "reference"
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Evolution Strategies Starter
Code for the paper "Evolution Strategies.."
...The codebase supports building custom AMIs with Packer, integrates with MuJoCo for simulation-based experiments, and includes scripts for launching and managing large-scale runs. While no longer actively maintained, the repository serves as a historical and educational reference. -
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enhanced-html-man-pages
Attractive simple html man pages viewable as text or html.
45mb zip file with 4910 commands. Enhanced and simple formatted html man pages that can still be understood in a text editor. The goal was to improve looks, add a quick reference to length documentation, include a table of contents, and intuitive examples. -
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Schism
A self-hosting Scheme to WebAssembly compiler
...Its architecture demonstrates advanced compiler design techniques such as staged compilation and snapshot-based bootstrapping. The project focuses on leveraging WebAssembly’s experimental capabilities, including reference types and tail calls, to test the limits of language portability and runtime performance. Though no longer actively maintained, Schism remains a valuable example of how high-level languages can be mapped to WebAssembly and offers insights into language implementation. -
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EQGRP
Decrypted content of eqgrp-auction-file.tar.xz
EQGRP is a public release of the so-called Equation Group hacking tools, originally leaked online in 2017. The repository serves as an archive and reference for security researchers, documenting the exploit frameworks, implants, and utilities that were allegedly used by a highly sophisticated threat actor. The tools include network exploitation scripts, backdoors, and frameworks targeting a range of platforms and services, many of which highlight previously unknown vulnerabilities. ... -
AI-generated apps that pass security reviewRetool lets you generate dashboards, admin panels, and workflows directly on your data. Type something like “Build me a revenue dashboard on my Stripe data” and get a working app with security, permissions, and compliance built in from day one. Whether on our cloud or self-hosted, create the internal software your team needs without compromising enterprise standards or control.
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Xcode Shell
shell script that used to auto-build xcode project
...These scripts are designed for macOS environments with Xcode command line tools installed and rely on simple configuration for server publishing or email notifications. While no longer actively maintained, xcode_shell remains a practical reference for lightweight automation of iOS app build and distribution processes. -
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QSdpR
Viral Quasispecies Reconstruction software based on QSdpR algorithm
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population. -
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SPANDx
Comparative analysis of haploid next-generation genome sequence data
SPANDx is your one-stop tool for identifying SNP and indel variants in haploid genomes using NGS data. SPANDx performs alignment of raw NGS reads against your chosen reference genome or pan-genome, followed by accurate variant calling and annotation, and locus presence/absence determination. SPANDx produces SNP and indel matrices for downstream phylogenetic analyses. Annotated, genome-wide SNPs and indels can also be identified if specified, and are output in human readable format. A presence/absence matrix is also generated to allow you to identify the core/accessory genome content across all your genomes. ... -
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OpenVPN for Docker
OpenVPN server in a Docker container complete with an EasyRSA PKI CA
...Extensively tested on Digital Ocean $5/mo node and has a corresponding Digital Ocean Community Tutorial. Pick a name for the $OVPN_DATA data volume container. It's recommended to use the ovpn-data- prefix to operate seamlessly with the reference systemd service. Users are encourage to replace example with a descriptive name of their choosing. Initialize the $OVPN_DATA container that will hold the configuration files and certificates. The container will prompt for a passphrase to protect the private key used by the newly generated certificate authority. Miscellaneous write-ups for advanced configurations are available in the docs folder. ... -
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic,... -
Atera all-in-one platform IT management software with AI agentsAtera’s AI agents don’t just assist, they act. From detection to resolution, they handle incidents and requests instantly, taking your IT management from automated to autonomous.
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Bocker
Docker implemented in around 100 lines of bash
...It is not intended for production use due to performance, security, and missing features, but it is a useful tool for learning how containers work under the hood. Many learners and educators reference it when teaching container internals or when debugging container behavior in a minimal environment. -
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HDFSFileTransfer
File transfer from local FS to HDFS
...Sample - one can have two single clustered Hadoop instances installed on two different linux machines. The script can copy files from one linux machine with Hadoop installed onto the other one. For further reference, read "Documentation of HDFSFileTransferByDK.pdf" available at the download section. -
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macOS Setup Guide
Installing Development environment on macOS
This guide covers the basics of setting up a development environment on a new Mac. Whether you are an experienced programmer or not, this guide is intended for everyone to use as a reference for setting up your environment or installing languages/libraries. Some environments we will set up are Node (JavaScript), Python, C++ and Ruby. Even if you don't program in all of them, they are useful to have as many command-line tools rely on them. We'll also show you some useful daily use applications. The first thing you should do is update your system. ... -
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CoDeCZ
Derive copy number status from targeted sequencing data
...Results are NOT true copy number however, but they are semi-quantitative: It uses the modified z-score to calculate deviation in normalized coverage per specified region. The higher the Z-score, the higher the copy number. The final z-score depends on the quality of the data and the makeup of the reference pool. -
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SOAPsv
SOAPsv: is a program for detecting the structural variation
This is an approach that complements previous methods for reliable homozygous structural variation identification. Our approach accurately determines genotype and breakpoints relative to a reference genome based on de novo assembly of Illumina Genome Analyzer sequencing data. In this method, we examined only homozygous structural variations because detecting heterozygous structural variations requires assembly of haplotype sequences, which is not yet possible using existing assemblers. -
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A set of Unix command line tools for quick and convenient batch processing of tabular text files (a.k.a., tab-delimited, csv, or flat file format) with a header line. Provides delimiter and compression detection, column reference by name. * tblmap: per-line ("map") computation: derive columns through an expression, delete, reorder, filter rows. * tblred: compute ("reduce") aggregations (e.g., sum, average) over groups defined by key columns. * tbldesc: Summarize columns in file (e.g., proportion of character/numeric values, min/mean/median/max, missing values, correlation with a target column)...
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If you're a frequent shell user, BASH Shortcuts will help you navigate smoothly and quickly between frequently-visited directories by enabling you to reference a lengthy directory path using a meaningful keyword (shortcut).
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Development goal for connFide is to create an affordable broadband connection monitoring appliance using inexpensive hardware and Open Source firmware/software. This device shall be called sensor box for quick reference. // DE: siehe [Wiki]/Summary
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Battery Life Tool Kit is a set of scripts and programs to monitor and log power consumption of Linux laptops/notebooks under different workloads. Set of reference workloads is included in the Tool Kit
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lease-parser is a simple daemon that records the lease state changes of an ISC DHCP server to a database for historical reference. The data can be searched via a web search form that is provided with the tool.
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Knowngoods Report Generator is a set of shell scripts and a Makefile which generate plain text reports about modified files on your system. It does this by the use of checksum reference files which can be found at http://www.knowngoods.org/download.html f
