Search Results for "simulation tools peptide"
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Showing 64 open source projects for "simulation tools peptide"
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HiPS : Hierarchical Petri net Simulator
HiPS tool features to design and analyze hierarchical Petri nets
HiPS tool is developed at the Department of Computer Science and Engineering, Shinshu University, which is a tool design and analysis of Petri nets, developed using Microsoft Visual C # and C++. HiPS tool has a way of intuitive GUI which enable hierarchical and/or timed-net design. HiPS tool has also functions of static/dynamic analysis : T-invariant detection, Reachability path analysis, deadlock state detection, and k-boundedness analysis. In addition, it is possible to perform a random... -
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Thrive
The main repository for the development of the evolution game Thrive
Thrive is a free, open-source game about the evolution of life. From the lowly tidepools of your home planet, you will rise to cosmic dominance. At every step, powerful creation tools and deep simulation mechanics will aid your species’ development. Revolutionary Games is the open-source team of dedicated volunteers aiming to make Thrive a reality. Our team seeks to accomplish two major goals: create engaging, compelling gameplay that respects our players’ intelligence, and remain as accurate as possible in our depiction of known scientific theory without compromising the former. ... -
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DAE Tools Project
Object-oriented equation-based modelling and optimisation software
DAE Tools is a cross-platform equation-based object-oriented modelling, simulation and optimisation software. It is not a modelling language nor a collection of numerical libraries but rather a higher level structure – an architectural design of interdependent software components providing an API for: - Model development/specification - Activities on developed models, such as simulation, optimisation, sensitivity analysis and parameter estimation - Processing of the results, such as plotting and exporting to various file formats - Report generation - Code generation, co-simulation and model exchange The following class of problems can be solved by DAE Tools: - Initial value problems of implicit form - Index-1 DAE systems - With lumped or distributed parameters - Steady-state or dynamic - Continuous with some elements of event-driven systems -
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AWS EC2 FPGA
AWS EC2 FPGA hardware and software development Kit
AWS EC2 FPGA Development Kit is a set of development and runtime tools to develop, simulate, debug, compile and run hardware-accelerated applications on Amazon EC2 F1 instances. It is distributed between this GitHub repository and FPGA Developer AMI - Centos/AL2 provided by AWS with no cost of development tools. After creating an FPGA design (also called CL - Custom logic), developers can create an Amazon FPGA Image (AFI) and easily deploy it to an F1 instance. AFIs are reusable, shareable... -
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AIClient-2-API
Simulates Gemini CLI, Antigravity, Qwen Code, and Kiro client
AIClient-2-API is a developer-focused tool that acts as a compatibility layer, simulating multiple AI client interfaces and translating them into standardized API requests compatible with OpenAI-style endpoints. It enables developers to connect various AI tools and clients, such as Gemini CLI, Qwen Code, or other proprietary interfaces, into a unified backend without needing to rewrite integrations. The system is designed to support high-throughput usage, handling large volumes of requests... -
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XLS
XLS: Accelerated HW Synthesis
XLS is an open-source toolkit for building high-level hardware with a modern compiler stack that spans from a functional DSL to optimized IR and hardware generation. At the front end, DSLX lets you describe algorithms with strong typing and familiar control flow while remaining synthesis-friendly. The compiler lowers DSLX into a rich intermediate representation, applies aggressive optimization and scheduling passes, and can either JIT the design for software simulation or emit Verilog for... -
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GeoStats.jl
An extensible framework for geospatial data science
GeoStats.jl is a Julia framework for geospatial data science and geostatistical modeling. It’s fully implemented in Julia and designed to provide an extensible, high-performance stack that handles spatial domains, interpolation, simulation, learning, and visualization. The package is modular: it breaks out geometry, spatial domains, transforms, variograms, covariance models, and modeling into subpackages (e.g., GeoStatsBase, GeoStatsModels, GeoStatsTransforms). Users can represent... -
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Flexprice
Usage-based pricing and billing for developers
Flexprice is an open-source dynamic pricing engine designed to help online businesses and marketplaces automate and optimize their pricing strategies. It allows developers and data scientists to experiment with pricing algorithms using real-time market data, inventory levels, and historical sales to maximize revenue, conversion, or competitiveness. Built with flexibility in mind, Flexprice can be integrated into existing e-commerce infrastructure via APIs and supports simulation and A/B... -
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FuseSoC
Package manager and build abstraction tool for FPGA/ASIC development
FuseSoC is a package manager and build abstraction tool for hardware description language (HDL) code, aimed at simplifying the development and reuse of IP cores. It provides a standardized way to describe, manage, and build hardware projects, facilitating collaboration and reducing duplication of effort in FPGA and ASIC development. -
Custom VMs From 1 to 96 vCPUs With 99.95% UptimeLive migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.
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Chipyard
An Agile RISC-V SoC Design Framework with in-order cores
Chipyard is a framework and generator for constructing custom RISC‑V SoC hardware. Built at UC Berkeley, it leverages Chisel/FIRRTL to generate full-stack systems—from CPU cores to peripherals—and includes simulators, FPGA deployment tools, and integration with Rocket Chip and other RISC‑V ecosystems. -
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Gource
Software version control visualization
Software projects are displayed by Gource as an animated tree with the root directory of the project at its centre. Directories appear as branches with files as leaves. Developers can be seen working on the tree at the times they contributed to the project. Gource includes built-in log generation support for Git, Mercurial, Bazaar and SVN. Gource can also parse logs produced by several third party tools for CVS repositories. Gource is a visualization tool for source control repositories. The... -
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Recursive Language Models
General plug-and-play inference library for Recursive Language Models
RLM (short for Reinforcement Learning Models) is a modular framework that makes it easier to build, train, evaluate, and deploy reinforcement learning (RL) agents across a wide range of environments and tasks. It provides a consistent API that abstracts away many of the repetitive engineering patterns in RL research and application work, letting developers focus on modeling, experimentation, and fine-tuning rather than infrastructure plumbing. Within the framework, you can define custom... -
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BSC
Bluespec Compiler (BSC)
BSC is the open source compiler toolchain for Bluespec SystemVerilog, a high-level, rule-based hardware design language. It translates Bluespec descriptions into synthesizable Verilog, letting developers bring typed, modular abstractions into mainstream FPGA/ASIC flows. The compiler performs scheduling of atomic rules, elaborates parameterized modules, and enforces interface contracts, producing predictable RTL that integrates with existing EDA tools. A companion simulator enables fast... -
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Racket
The Racket repository
Racket is a general-purpose programming language and an ecosystem for language-oriented programming. This repository holds the source code for the core of Racket plus some related packages. The rest of the Racket distribution source code is in other repositories, mostly under the Racket GitHub organization. Racket programmers typically program with functions, records, objects, exceptions, regular expressions, modules, and threads. That is, instead of a “minimalist” language, which is the way... -
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PICSimLab - Prog. IC Simulator Lab.
PICSimLab is a realtime emulator for PIC, Arduino, STM32, ESP32, ...
...PICSimLab has integration with MPLABX/Arduino IDE for programming the microcontroller's boards. As the purpose of PICSimLab is to emulate real hardware it does not have any source code editing support. For code editing and debugging the same tools used for a real board should be used with PICSimLab, such as MPLABX, Arduino IDE, or VSCode with PlatformIO. PICSimLab supports several devices (spare parts) that can be connected to the boards for simulation. Such as example LEDs and push buttons for simple outputs and inputs and some more complex ones like the ethernet shield w5500 for internet connection or the color graphic display ili9340 with touchscreen. ... -
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HARFANG 3D engine
HARFANG 3D source code public repository
HARFANG 3D builds real-time 3D tools for industry professionals. Its software suite is tailored to developers, designers and engineers aiming to efficiently and seamlessly develop, implement & deploy 3D solutions (HMI, VR/AR, simulation, interactive 3D), regardless of development language or platform constraints. HARFANG Studio is the ideal 3D editor for creating real-time scenes & animations that match your design vision. -
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slab3d
slab3d is a real-time virtual acoustic environment.
slab3d is a real-time virtual acoustic environment rendering system. It includes two rendering applications, libraries for spatial auditory display and audio signal processing development, and a set of tools for HRTF analysis and visualization. -
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The FMI++ Library
A High-level Utility Package for FMI-based Software Development
...The FMI++ library intends to bridge the gap between the basic FMI specifications and the typical requirements of simulation tools. It is distributed using a BSD-like license. -
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TRANSIMS is an integrated system of travel forecasting tools for modeling regional transport systems. For more information, visit http://code.google.com/p/transims/
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Mimosa is a modeling and simulation platform, covering the process from building conceptual models to running the simulations. The specification uses ontologies and an extensible set of formalisms for the dynamics. The simulation kernel is based on DEVS.
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CDN Up and Running
CDN Up and Running - Building a CDN from Scratch to Learn about CDN
...The project uses technologies such as Nginx, Lua, Docker, Prometheus, and Grafana to simulate realistic CDN environments and monitoring systems. It also explores performance considerations, including latency simulation, load balancing, and scalability. By integrating observability tools, it enables users to analyze system behavior and performance metrics. -
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PINCIS
PINCIS.pl is a Perl bioinf. script to analyze PICS data
PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be... -
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This project hosts a library and tools for sharing simulation experiments encoded using SED-ML.
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Integrated Development Environment for some microcontrollers based on 8051(e.g. AT89S8253). Supported languages are Assembly and C. It has its own simulator, assembler, editor and many other tools. See the project web site for more details and the newest updates.
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vinylsimtool
vinylsimtool: simulation of vinyl record playback
vinylsimtool: Simulation of audio artifacts of vinyl record playback systems, based on physical modelling. --- vinylsimtool: Simple command-line tool for WAV file processing. Copyright (c) 2017 by Klaus Michael Indlekofer. All rights reserved. --- Vinylsimtool-Plugin-VST: Real-time plug-in. Copyright (c) 2017-2019 by Klaus Michael Indlekofer and Sebastian Marcus Edelmann. All rights reserved. Note: Special restrictions apply. See disclaimers below and within the distribution. (We are...
