Showing 64 open source projects for "squid-graph"

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    DIG

    DIG

    A library for graph deep learning research

    The key difference with current graph deep learning libraries, such as PyTorch Geometric (PyG) and Deep Graph Library (DGL), is that, while PyG and DGL support basic graph deep learning operations, DIG provides a unified testbed for higher level, research-oriented graph deep learning tasks, such as graph generation, self-supervised learning, explainability, 3D graphs, and graph out-of-distribution.
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  • 2
    Jraph

    Jraph

    A Graph Neural Network Library in Jax

    ...The library includes a comprehensive set of utilities for batching, padding, masking, and partitioning graph data, making it ideal for distributed and large-scale GNN experiments. Jraph also comes with a model zoo—a collection of forkable reference implementations of common message-passing GNN architectures, such as Graph Networks, Graph Convolutional Networks, and Graph Attention Networks.
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  • 3
    pyTorch Tutorials

    pyTorch Tutorials

    Build your neural network easy and fast

    ...The project is structured around clear, executable Python scripts and Jupyter notebooks that demonstrate regression, classification, convolutional networks, recurrent networks, autoencoders, and generative adversarial networks, which gives learners practical exposure to real machine learning tasks. Each example explains PyTorch’s dynamic computation graph, optimization techniques, and core abstractions in a way that is accessible and reproducible. Contributors and authors integrate visual and coded examples so readers can see both the theory and the implementation side-by-side.
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  • 4
    Apache MXNet (incubating)

    Apache MXNet (incubating)

    A flexible and efficient library for deep learning

    Apache MXNet is an open source deep learning framework designed for efficient and flexible research prototyping and production. It contains a dynamic dependency scheduler that automatically parallelizes both symbolic and imperative operations. On top of this is a graph optimization layer, overall making MXNet highly efficient yet still portable, lightweight and scalable.
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    TensorNetwork

    TensorNetwork

    A library for easy and efficient manipulation of tensor networks

    TensorNetwork is a high-level library for building and contracting tensor networks—graphical factorizations of large tensors that underpin many algorithms in physics and machine learning. It abstracts networks as nodes and edges, then compiles efficient contraction orders across multiple numeric backends so users can focus on model structure rather than index bookkeeping. Common network families (MPS/TT, PEPS, MERA, tree networks) are expressed with concise APIs that encourage...
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  • 6
    Minkowski Engine

    Minkowski Engine

    Auto-diff neural network library for high-dimensional sparse tensors

    The Minkowski Engine is an auto-differentiation library for sparse tensors. It supports all standard neural network layers such as convolution, pooling, unspooling, and broadcasting operations for sparse tensors. The Minkowski Engine supports various functions that can be built on a sparse tensor. We list a few popular network architectures and applications here. To run the examples, please install the package and run the command in the package root directory. Compressing a neural network to...
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  • 7
    Awesome Graph Classification

    Awesome Graph Classification

    Graph embedding, classification and representation learning papers

    A collection of graph classification methods, covering embedding, deep learning, graph kernel and factorization papers with reference implementations. Relevant graph classification benchmark datasets are available. Similar collections about community detection, classification/regression tree, fraud detection, Monte Carlo tree search, and gradient boosting papers with implementations.
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  • 8
    TFLearn

    TFLearn

    Deep learning library featuring a higher-level API for TensorFlow

    ...Full transparency over Tensorflow. All functions are built over tensors and can be used independently of TFLearn. Powerful helper functions to train any TensorFlow graph, with support of multiple inputs, outputs, and optimizers. Easy and beautiful graph visualization, with details about weights, gradients, activations, and more. Effortless device placement for using multiple CPU/GPU. The high-level API currently supports the most of the recent deep learning models, such as Convolutions, LSTM, BiRNN, BatchNorm, etc.
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  • 9
    gradslam

    gradslam

    gradslam is an open source differentiable dense SLAM library

    ...However, learning representations for SLAM has been an open question, because traditional SLAM systems are not end-to-end differentiable. In this work, we present gradSLAM, a differentiable computational graph take on SLAM. Leveraging the automatic differentiation capabilities of computational graphs, gradSLAM enables the design of SLAM systems that allow for gradient-based learning across each of their components, or the system as a whole.
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  • 10
    Pytholog

    Pytholog

    A logic programming tool and a logical database with a RESTful API

    Pytholog Tool (Command line & API) An executable tool, built in python, that enables logic programming and prolog syntax through interactive shell that mimics prolog language and / or RESTful API that can be called from other applications. The tool is based on the python library pytholog which can be found here: https://github.com/mnoorfawi/pytholog The tool starts normally from the command line. Let's look at the arguments that can be specified while initiating the tool: $...
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  • 11
    Albedo

    Albedo

    A recommender system for discovering GitHub repos

    Albedo is an open-source recommender system aimed at helping developers discover GitHub repositories by learning from activity signals. It treats repositories and developers as a graph of interactions and applies large-scale matrix factorization to model affinities, with Apache Spark providing the distributed data processing. The project focuses on implicit feedback—stars, watches, and other engagement metrics—so it can build useful recommendations without explicit ratings. A reproducible setup and Makefile-driven workflow streamline tasks like spinning up services, loading datasets, training models, and generating candidate lists. ...
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  • 12
    Graph Nets library

    Graph Nets library

    Build Graph Nets in Tensorflow

    Graph Nets, developed by Google DeepMind, is a Python library designed for constructing and training graph neural networks (GNNs) using TensorFlow and Sonnet. It provides a high-level, flexible framework for building neural architectures that operate directly on graph-structured data. A graph network takes graphs as inputs, consisting of edges, nodes, and global attributes, and produces updated graphs with modified feature representations at each level. ...
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  • 13
    Pinject

    Pinject

    A pythonic dependency injection library

    ...Because bindings are just Python functions and classes, refactoring remains straightforward and the DI graph is easy to reason about. Pinject is particularly useful for medium-to-large services where configuration, logging, data clients, and business logic need clean separation without resorting to manual plumbing.
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  • 14

    TestRest

    TestRest is a fully QA Management Tool

    TestRest is Test Management offers test case authoring, reusable test cases, test execution and reporting. TestRest supports statistic and graph reports with simple modern UI interfaces.
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  • 15
    pipupgrade

    pipupgrade

    Like yarn outdated/upgrade, but for pip

    ...Additionally, it supports updating requirements.txt and Pipfile files, ensuring that dependency specifications remain current. With features like parallel processing and dependency graph visualization, pipupgrade enhances the efficiency and clarity of Python package maintenance.​
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  • 16
    PyTorch Book

    PyTorch Book

    PyTorch tutorials and fun projects including neural talk

    This is the corresponding code for the book "The Deep Learning Framework PyTorch: Getting Started and Practical", but it can also be used as a standalone PyTorch Getting Started Guide and Tutorial. The current version of the code is based on pytorch 1.0.1, if you want to use an older version please git checkout v0.4or git checkout v0.3. Legacy code has better python2/python3 compatibility, CPU/GPU compatibility test. The new version of the code has not been fully tested, it has been tested...
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  • 17
    Tangent

    Tangent

    Source-to-source debuggable derivatives in pure Python

    Existing libraries implement automatic differentiation by tracing a program's execution (at runtime, like PyTorch) or by staging out a dynamic data-flow graph and then differentiating the graph (ahead-of-time, like TensorFlow). In contrast, Tangent performs ahead-of-time autodiff on the Python source code itself, and produces Python source code as its output. Tangent fills a unique location in the space of machine learning tools. As a result, you can finally read your automatic derivative code just like the rest of your program. ...
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  • 18
    node2vec

    node2vec

    Learn continuous vector embeddings for nodes in a graph using biased R

    ...It allows researchers and practitioners to apply node2vec to various graph datasets and evaluate embedding quality on downstream tasks. By bridging ideas from graph theory and word embedding models, this project demonstrates how graph-based machine learning can be made efficient and flexible.
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  • 19
    Algorithms in Python

    Algorithms in Python

    Data Structures and Algorithms in Python

    Algorithms in Python is a collection of algorithm and data structure implementations (primarily in Python) meant to serve as both learning material and reference code for engineers. It includes code for graph algorithms, heap data structures, stacks, queues, and more — each implemented cleanly so learners can trace logic and adapt for their problems. The repository is particularly useful for people preparing for competitive programming, job interviews, or building a foundational understanding of algorithmic patterns. Because it’s openly maintained, you can browse through issues, see test cases, and observe coding style in a “learning through code” fashion. ...
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  • 20
    It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search.
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  • 21

    Stat cvs/svn Code Change

    stat. cvs,svn code changes and generate html report

    It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search. It's the mirror project of CodeChangeViewer: http://sourceforge.net/projects/ccv/.
    Downloads: 0 This Week
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  • 22

    Aqualid

    General purpose build system

    General purpose build tool. Key features: Flexible and scalable for large projects Dynamic dependency graph Batch build support Distributed build scripts (no fixed project structure) Support any build target types (files, strings, URLs, remote resources etc.) Conditional options Scons like build scripts (but don't compatible)
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  • 23

    NGSbinningpytools

    Python tools for binning NGS scaffolds to various genomes.

    Next generation sequencing has opened new avenues for sequencing prokaryotes which were difficult or either impossible to culture. Now, it is possible to sequence all organisms present in a metagenomic community. However, a critical problem is to determine the host organism for each genomic fragment present in the dataset. This project provides the computational tools for assigning the organismal identity for each genomic scaffold in the given dataset. For more detailed documentation...
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  • 24
    This project develops a simple, fast and easy to use Python graph library using NumPy, Scipy and PySparse.
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  • 25

    OpenSQUID

    Superconducting QUantum Interference Devices (SQUIDs) control software

    OpenSQUID is a Python framework for the control of SQUID (superconducting quantum interference device) readout electronics. It currently supports the Star Cryoelectronics PCI-1000 electronics with PFL-100 and PFL-102 flux-locked loops. Simultaneous operation of both PFL-100s and PFL-102s from a single PCI-1000 is supported. More features are under development. The software is implemented in Python and aims to be easily integrated with user-defined measurement and control code.
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