Open Source Python Simulation Software - Page 14

This python package aims to help people set up and analyze molecular dynamics simulations in aqueous-organic solvent mixtures. See D. Alvarez-Garcia et al. Journal of Medicinal Chemistry, 2014.

pyPulsar is a program for simulation and fitting of solid-state NMR spectra. It provides scripting facilities using Python. (This project was not developed for a long time: It will be soon moved in a new project currently developed)

PySimiam is a robot simulator, created to follow the course "Control of Mobile Robots" offered at Coursera. The simulator models an arbitrary number of mobile robots in a 2D environment, each controlled by a arbitrary algorithm.

Basic 3D structural analysis in python. GUI allows building simple 3D shapes, applying static loads and monitoring dynamic load on beams. Based on OpenGL and ODE.

pybrn is a Python package for the analysis of biochemical reaction networks. It provides basic model handling capabilities, import from SBML, analysis of conservation relations, steady state computation and model simulation.

pydaqtools provides a common interface to data-acquisition hardware for Python. Control analog/digital output or acquire analog/digital input for immediate analysis with Python for scientific, educational or engineering applications.

Event based simulator that allow to yield from nested function. Implemented using greenlet and standard thread python library.

PyDocumentary, is a class file that allows for a straight forward movement of information in a python simulation to a latex report. It is not a form of literate programming.

A collection of python classes for computational ecology and evolutionary biology.

A python framework for fuzzy inference computations

pymesh will be a Python interface for Triangle (2D) and Tetgen (3D) mesh generators.

pyomnet provide an object-oriented way to define the network topology. It's a good way to illustrate network in an abstract way. pyomnet could generate the NED scenario and configuration(latter) for OMNeT++ simulation tool.

An open source project project to make Quantum Field Theory calculations and demonstrations using python.

rmachine is a register machine simulator (the complexity theory version), programmed in python, complete with a module to be used in your programs and a (PyQt4) GUI.

The rp6simul project brings simulation software for the RP6 robot that is manufactured by AREXX engineering. Besides support for all peripherals on the robot base, the simulator also fully supports the m32 extension module, and both can be simulated either independently or simultaneously. Furthermore, a simple 2d environment can easily be created to test lighting, collision, motor speeds and so on. The simulator does not run native AVR files, but instead a thin wrapper is provided so that the AVR code can be compiled natively. Thanks to this wrapper, and a flexible Lua driver interface, the simulator emulates most of the IO registers, requiring no or minimal code modifications. rp6simul is primarily developed on Linux, but a Windows version will also be released.

rsim is a simple discrete-event communications network simulator initially developed to test routing protocols for undersea acoustic modem networks. If done well then rsim will eventually be a good replacement for "ns2".

The sandwich project aims to provide an extensible aircraft design toolbox.

Use SASSIE to generate and manipulate large numbers of molecular structures and then calculate the SAXS, SANS, and neutron reflectivity profiles from atomistic structures. Use for intrinsically disordered proteins. We need alpha-testers and developers.

sfunctioner is a GUI wizard written in PyQt for creating Matlab Simulink sfunctions quickly and efficiently. It helps creating a fully functional sfunction within a few minutes.

A Software project to assimilate solar magnetograms into suitable physics based models of the solar wind expansion. To predict the solar wind conditions at the Earth and at outer planets. Or any space-craft location in the solar system.

STOCHSIM is a stochastic simulator for biochemical reactions. The particles are represented as individual software objects which react according to probabilities derived from concentrations and rate constants. Simple spatial structures can be built.

TAROT is a easy-to-use framework for Monte Carlo simulations in python. Calculations between different kinds of randomly distributed numbers are made as easy as basic arithmetics. Tarot provides an interactive graphical interface for interpretation.

Modular, Configurable Simulator for Computer Architects

vtkModeling-beta.zip: it is an extension of Visualization ToolKit 5.0. Basically it's a collection of deformation algorithms, like laplacian surface editing, moving least square, mass spring system, etc.