Open Source Python Simulation Software - Page 10

PyMaTi is a simple and easy to use GUI for numerical and scientific computing in Python. It surrounds well know packages NumPy and Matplotlib and provides possibility to immediately play with numerical python from intuitive user interface.

PyMbs has moved to Bitbucket: https://bitbucket.org/pymbs/pymbs PyMbs is a Python library for modelling holonomic multibody systems. It is able to generate simulation code for Python, Modelica and Matlab.

PyParticles is an opensource particles simulation tool box entirely written in python. It support the most popular integrations methods and the most relevant forces model. It also offer a nice looking OpneGL interface or at your preference a Matplotlib based GUI. PyParticles as a forces models implements Gravity, spring, constant force and electrostatic and the user defined vector field force. As a integrations method it includes Euler, Midpoint, Runge Kutta, Störmer Verlet and Leap frog.

PyPhys is a set of physical quantity classes written in Python. The classes represent physical quantities (like length, pressure, energy, etc.) that can be assigned and extracted in many different units.

PyPlayground is an environment for developing algorithms involving movement in a space of up to three dimensions using Python.

PyZgoubi is an interface to the Zgoubi particle tracking code written in python. It aims to ease the use of Zgoubi by providing a simple interface to create beam line elements and particles, and to automate running and analysing of simulations.

A collection of modules and enduser tools designed to help design, test and use system models. While my research (hence, the examples) is focused on hydro-ecological systems, the program can be used on any system characterized by ODEs (and soon PDEs?)

PySCeS is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time course and steady state, and does a complete control analysis.

Pysolar is a Python library for calculating the position of the sun relative to the earth as a function of latitude, longitude, and time. There is also code included for other problems related to the development of photovoltaic systems. Still in alpha.

Moved to Google Code, see http://code.google.com/p/pythonequations/downloads/list

QDC (quick direct-method controlled) is an optimized exact implementation of the Gillespie's direct-method. It is designed for biochemical simulations when there is the need of dynamic parameters whose values can change during the simulation.

QMcBeaver is an object-oriented program to perform Quantum Monte Carlo calculations on atoms and molecules. It is designed to be easy to modify, allowing new ideas to be quickly implemented.

QtoNum is a calculator for qualitative values (-, +), intervals and crisp numbers with arbitrary precision. QtoNum also handles infinitesimals and infinites. All these types can be mixed in expressions and conversions are performed automatically. QtoNum can be used as an interactive calculator (command line) and as a calculus library.

Calculate electronic properties of graphene-like systems with a user friendly interface. The code uses the tight binding approximation and it is able to stude in a 0D, 1D and 2D geometries, orbital and magnetic fields, intrinsic and extrinsic spin-orbit coupling, sublattice imbalance, and interactions at the mean field level. The most recent version can be found in https://github.com/joselado/quantum-honeycomp Example videos https://www.youtube.com/watch?v=8gO1yRmwgAs https://www.youtube.com/watch?v=FQlkqAW7Nhs https://www.youtube.com/watch?v=R7Kt3_DHTtM https://www.youtube.com/watch?v=tQKG_h0FaTM

The "RISC-0" project is a collection of Python libraries and programs to support the RISC architecture described by Prof. Niklaus Wirth on his web page (http://www.inf.ethz.ch/personal/wirth/Articles/FPGA-relatedWork/index.html)

RYUON : many-particle simulation suite

This project has migrated to github: https://github.com/raysect

Create your own distributed computer that can distributed javascript based applications to any computer with a web browser, headless browser or node.js installation. For more information and updates please see our website - http://reorjs.com.

The SIMP/STEP platform provides a fast, efficient, portable abstract framework for interactive and scripted cellular automata and lattice gas computing in the Python environment. SIMP provides a high-level 'programmable matter' laboratory built on

In the selective laser melting process (SLM), components are built up layer by layer by incremental melting of metal powder with a laser beam. This process leads to locally inhomogeneous material properties of the manufactured components. By integrating these specific material properties of the SLM-process into a topology optimization, product developers can be supported in the design process by simulation. For this purpose, a topology optimization method is being developed which takes into account the unique material properties of parts manufactured with the SLM-process. In this homepage, the generation of a material database as well as the development of the topology optimization method is introduced and the impact on the component design is presented. SLM-Topo is a joint research project of the Institute of Product Engineering (IPEK) and the Institute for Applied Materials (IAM) of the Karlsruhe Institute for Technology (KIT) funded by the Deutsche Forschungsgemeinschaft (DFG).

SMMP (Simple Molecular Mechanics for Proteins) is a program library for protein simulations with an emphasis on advanced Monte Carlo algorithms. It includes various force fields to calculate the energy of a protein and protein-protein interactions.

Simulator for large neuronal networks using leaky INF as its basic element. Simple few line scripts will enable rapid creation of large networks with different connectivities. Aimed at researchers interested in quickly testing large networks of neurons.

STARucn (Simulation of Transmission, Absorption and Reflection of ultracold neutrons) is a Monte-Carlo software designed to simulate experimental setups and guides for ultra cold neutrons. It relies heavily on CERN's ROOT packages. Developing team : Benoit Clément, LPSC/UJF Damien Roulier, ILL/UJF

Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes. Please check our new repository: https://github.com/CNS-OIST/STEPS

As the final step of manufacturing, assembly plays a very important role. During lens assembly, fabrication errors of components are summarized and dramatically affects lens performance. Selective assembly is cost-effective solution for improving the quality of assembled product. Also selective assembly could reduce cost of product by allowing loose tolerances. Selective Assembly GUI Application (SAGA) is ZEMAX extension which allows you to arrange components in best possible assemblies.