Open Source Mac Simulation Software - Page 6

Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of individuals to be simulated or on number of non-predisposing genetic/environmental factors to be considered. The GENS2 tool is able to simulate gene-environment and gene-gene interactions. To make the Simulator more intuitive, the input parameters are expressed as standard epidemiological quantities. GENS2 is written in Python language and takes advantage of operators and modules provided by the simuPOP simulation environment. It can be used through a graphical or a command-line interface.

ASDN - "Agile Supply Demand Networks" is software for analyzing and developing logistics networks.

GatcomSUMO is a multi-platform application that facilitates the building of VANET simulations using the SUMO traffic simulator and the OMNeT++ network simulator. The tasks related to the generation of abstract or synthetic scenarios, the download and conversion of network scenarios based on real maps (e.g. from OpenStreetMap), the route creation process, and the vehicles mobility modelling are integrated in a user-friendly graphical interface. This tool performs the necessary actions by invoking the set of utilities included in SUMO, saving the user from typing complex command-line orders. GatcomSUMO visualizes the network and routes easily, and they are created in such a way to meet the requirements of the involved simulators, in particular OMNeT++, in order to avoid misunderstandings and runtime errors. The application allows the conversion of the spatial coordinates used by SUMO into those used by OMNeT++, which is essential to place fixed elements like RSUs.

Open-source CT/ Radiography simulation package. XRaySim works seamlessly with commercial CAD packages and performs highly detailed scan simulations, with virtual X-ray sources and detectors, simulating cracks/ inclusions etc. very easily

This library contains several of user material subroutines for implicit quasi-static (UMAT) and explicit dynamic (VUMAT) versions of the Abaqus solver. The project web site: http://abumpack.sf.net. The Abaqus is a proprietary finite element (FE) code ( http://www.3ds.com/products-services/simulia/products/abaqus/). Users can write subroutines for use with the Abaqus. Linear elastic, isotropic hardening plasticity, Gurson-Tvergaard-Needleman (GTN), Rousselier constitutive models are provided. Quote this code as: A. Shterenlikht, N. A. Alexander, Levenberg-Marquardt vs Powell's dogleg method for Gurson-Tvergaard-Needleman plasticity model, Computer Methods in Applied Mechanics and Engineering 237-240:1-9 (2012). DOI: http://dx.doi.org/10.1016/j.cma.2012.04.018

The program does nmr product operator calculations for one, two, three and four spins. Receiver phase cycling is possible in conjunction with pulse phase cycling to simulate coherence pathway selection. An extensive manual and help files are included. Currently running under Linux and Windows.

GLUI is a GLUT-based C++ user interface library which provides controls such as buttons, checkboxes, radio buttons, and spinners to OpenGL applications. It is window-system independent, using GLUT or FreeGLUT.

An Educational Toolbox on Data Communications, including Encoding Schemes, Bit-Error-Rate (BER), Noise and Spectral Analysis for Scilab

GENESIS (GEneral NEural SImulation System) is a software platform for the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, large networks, and systems-level processes.

Elastic network models (ENMs) have been shown to generate the dominant functional equilibrium motions of biomolecules quickly and efficiently. MAVEN simplifies ENM generation, allows for diverse models to be used, and facilitates useful analyses.

Script for Maxima (a Computer Algebra System) that performs symbolic analysis of analog integrated circuits. Script allows to find approximated poles and zeros of transfer functions, developed and optimized for transfer functions of amplifiers, but can be used also for any general analog circuit. The script calculates DC transfer function, zeros, poles and creates Bode plots. DC transfer function, zeros, poles result simplified so main contributing elements can be easily identified. Poles and zeros approximation principle mainly taken from the paper "INDIRECT FEEDBACK COMPENSATION TECHNIQUES FOR MULTI-STAGE OPERATIONAL AMPLIFIERS" by Vishal Saxena Usage examples also can be taken from "Maxima Opamp Analisys" project Any comments bug reports and improvement suggestions are welcomed! ** The project based on script and concept initially developed by Ram Livne **

I need your help: In order to make this framework easier and more useful, I need your contribution. The idea behind this framework is to develop a GUI like GNS3 and make this framework more stable. So if you are interested and have C/C++ programming skills, please contact me at zahid.med@gmail.com This framework allows to emulate a network by managing ethernet packets coming from two kind of interfaces: UDP and virtual network card. This tool is similare to dynamips (GNS3) but it can manager a higher packet rate. It can help to study DDoS attacks based on Botnet using the Lightweigth C++ Virtual Machine (LwCVM) in order to emulate Bots. This project is based on the following projects and libraries: LightweighIP of the TCP/IP stack pthread libpcap for communication with virtual machines dynamips Linux MicroCore

An open source circuit simulator for power electronics applications. The objective is to provide a platform that will enable an advanced user to simulate large systems with several converters without being an excessive burden on the CPU.

This is an architecture simulator. Its purpose is to help graduation students to learn how to build digital circuits, using from simple gates to full microprocessors, including memories and peripherals.

ShoX is a scalable simulator for wireless networks written in Java. It is easy to install, configure and use, so that reliable and expressive scientific results can be gathered in a short time. Documentation: http://sourceforge.net/apps/mediawiki/shox

Programmer's library for random numbers. Also random number generator testing code. Intended for simulation, games and "Monte-Carlo" algorithms.

JGAP is a Genetic Algorithms and Genetic Programming package written in Java. It is designed to require minimum effort to use, but is also designed to be highly modular. JGAP features grid functionality and a lot of examples. Many unit tests included. Legal notice/Impressum: Klaus Meffert An der Struth 25 D-65510 Idstein sourceforge <at> klausmeffert.de

is a molecular viewer & model builder for quantum chemistry programs. It has an interface with NWChem, CP2K and PC GAMESS/Firefly quantum programs. http://www.biomolecular-modeling.com/Products.html

This program allows you to create a transmission hologram using just a computer, a laser-printer, and an overhead transparency. This hologram will behave like one created using a laser and can be projected or viewed with a point source.

ECMOjo is a simulator and trainer for extracorporeal membrane oxygenation (ECMO). ECMOjo consists of a graphical user interface to allow interaction and train ECMO practitioners.

UbikSim is an infrastructure to study complex AmI (Ambient Intelligence) applications which involve a large number of users. It is a MABS (multi-agent based simulation) programmed in MASON and aims to be as descriptive as possible.

Simple 8085 assembler and disassembler for educational use. The 8085asm generates the map file and intel hex file. It support the directives EQU, ORG, DB, DS and END.

ADiGator is a source transformation via operator overloading tool for the automatic differentiation of mathematical functions written in MATLAB. Given a user written file, together with information on the inputs of said file, ADiGator uses forward mode automatic differentiation to generate a new file which contains the calculations required to compute the numeric derivatives of the original user function. Furthermore, these calculations are written entirely in the native MATLAB language, and thus the process may be repeated to obtain nth order derivative files. The package is particularly appealing for applications where the same derivative must be found at multiple different points, i.e. non-linear root finding/optimization, stiff ode integration, etc.

AcouSTO (Acoustic Simulation TOol) is a low-order BEM code to solve the Kirchhoff Integral Equation. An arbitrary number of scattering/radiating bodies, monopoles, and plane waves is allowed. Runs in parallel on MPI2-equipped clusters.

A C/C++ library for Cavity Quantum Electrodynamics Simulations. CQEDSimulator is a framework that provides all basic mathematical elements and methods to perform quantum numerical simulations. It's crossplatform, that works on Windows, Linux, Mac...