Search Results for "simulations" - Page 3
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Showing 119 open source projects for "simulations"
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JABM is a Java framework for building agent-based simulation models using a discrete-event simulation framework.
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pyMDMix
Molecular dynamics with aqueous-organic solvent mixtures
This python package aims to help people set up and analyze molecular dynamics simulations in aqueous-organic solvent mixtures. See D. Alvarez-Garcia et al. Journal of Medicinal Chemistry, 2014. -
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NiCE
Modeling and Simulation made NiCE!
...Contact: billingsjj <at> ornl . gov The NEAMS Integrated Computational Environment (NiCE) facilitates the flexible development, composition and use of a wide range of simulations, models and analysis tools for NEAMS integrated performance and safety codes. -
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SFS_CODE (Selection on Finite Sites under COmplex Demographic Events) performs forward population genetic simulations under a general Wright-Fisher model with arbitrary demographic, selective, and mutational effects.
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Analysis software for Nbody/SPH or SPH simulations (e.g. performed with Gadget II). See http://sourceforge.net/apps/wordpress/hyplot/about and http://sourceforge.net/apps/trac/hyplot/wiki for more information.
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StochPy - Stochastistic modeling in Python - is an easy-to-use package, which provides several stochastic simulation algorithms and unique analysis techniques, which can be used for stochastic simulations of biochemical systems.
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Libraries for integration of atmospheric trajectories. Includes a basic trajectory integrator, contour advection codes and semi-Lagrangian tracer simulations.
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Interactive Web Physics is a Java, Web-based animation and problem designer tool. Anyone can quickly design mathematics or physics animations and simulations that run in a web browser. Unlike other solutions, no knowledge of programming is required.
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SBSI (Systems Biology Software Infrastructure) is a suite of tools for systems biology, such as parallelized numerical algorithms, and a Java, Eclipse RCP based client for visualizing results, running simulations, and integrating SBML based plugins.
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KEMP
A FDTD solver for electromagnetic wave simulations on a GPU cluster
KEMP is a fast FDTD solver on a GPU-based cluster. The FDTD (Finite-Difference Time-Domain) method is a popular numerical method for electromagnetic field simulations. KEMP enables hardware accelerations suitable for multi-GPU, multi-core CPU and GPU cluster. KEMP also provide easy configuration by using Python scripting language. -
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This project hosts the 'Simulation Tool', an extensible, interactive environment for carrying out simulation experiments of SBML models. This project can use RoadRunner or SBW enabled simulators to carry out simulations.
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OOMMF magnetoelastic extension
Incorporates the magnetoelastic energy in OOMMF simulations.
OOMMF magnetoelastic extension incorporates the magnetoelastic energy to micromagnetic simulations with OOMMF (Object-Oriented Micromagnetic Framework). The extension provides additional Oxs extensible classes, in which you can specify the elastic strain or the displacement along with the magnetoelastic coefficients. Spatially-nonuniform, time-varying strain can be specified either with Tcl scripts or file lists and the effective magnetoelastic field and energy is computed at each simulation step. -
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fPotencia
Power flow library in C++
...After observing the lack of ready-to-implement libraries for power system analisys, and that the existing ones focus on command line workflow, I decided myself to start a project to fill the gap. Since Power system simulations have started needing to be executed in parallel, the old C-like designs are outdated; modular design is now needed to launch many simulations at the same time based on a base circuit. fPotencia is programmed in C++, but my intention is to bring JAVA, C#, Python and perhaps MATLAB versions of it. All of them in native code and whenever possible with the same modular structure. -
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µic is a modelling engine for simulations of microstructural development. It takes localied behaviours as input from the user and integrates the global behaviour, with the calculation of all interactions as required by the application.
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This is the program and data to accompany both the thesis and paper under the name A MINE ALTERNATIVE TO D-OPTIMAL DESIGNS FOR THE LINEAR MODEL This contains the program and summary of the data used for the paper.
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Migration of cells in a social context
Model of the migration of 3T3 fibroblast cells in social context
...There were a few errors in the physical model of the concentration field of secreted chemokine surrounding each cell, together with a few coding errors. All have been corrected, the model refitted, and all simulations presented in the paper repeated. Results from this corrected model are on par with the published results. See pdf file for details. -
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Raysect Python Raytracing Framework
A raytracing framework for optical/non-optical physics simulations
This project has migrated to github: https://github.com/raysect -
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RSSA
Rejection-based stochastic simulation algorithm (RSSA)
Rejection-based stochastic simulation algorithm (RSSA) is an efficient exact algorithm for doing stochastic simulation of biochemical reaction systems. RSSA improves over state of the art of stochastic simulations by avoiding and collapsing as much the number of propensity updates. -
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pychemqt
Chemical Engineering process simulations program
pychemqt is a software for simulate units operations in Chemical Engineering -
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Agent.GUI
The Project moved to github https://github.com/EnFlexIT/AgentWorkbench
The project has moved to github https://github.com/EnFlexIT/AgentWorkbench Agent.GUI is a simulation framework and toolkit based on the JADE framework. It provides functionalities for time aspects, agent-environment interaction, visualization and load balancing, Furthermore, the included application focuses the usability for end users. -
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Aciqra
A virtual planetarium for observers of the real sky.
Aciqra is a virtual planetarium and sky mapping program which tracks celestial bodies including planets, deep sky objects and stars to an accuracy of a fraction of a degree for thousands of years into both the future and the past. It includes the 2.5 million stars of the Tycho-2 catalog supplemented by data of 120,000 stars from the Hipparcos catalog, 13,000 deep space objects from the NGC and IC catalogs and a large number of asteroids and comets from the Minor Planet Center. The program is... -
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SPiM2Eclipse
Eclipse plugin for Stochastic Pi Machine
...Fortunately Microsoft has also released a command line version for Linux and Mac OS based on OCAML however this version will only output a CSV file for the simulation results. SPiM2Eclipse provides a bridge for those running SPiM from the command-line by allowing simulations to be completed by a single click, displaying an embedded plot of the results. Features: -As an Eclipse plugin you have all of the powerful features of Eclipse available to you. -Syntax color highlighting -One-click simulation with plotting For more information on SPiM see the offical project website at: http://research.microsoft.com/en-us/projects/spim/ -
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Evrika
Science simulator and advanced calculator based on modules
...Modules are libraries containing definitions of concepts that can be used in the simulation. By definitions we mean properties, actions, reactions, etc. Evrika is used for creating both simulations and modules, so you can build your own module of elements, then use them to create virtual experiments and simulations. Also, you can make advanced calculations. Evrika is basically an executable that reads and interprets code, outputing result. Each new version will offer new possibilities to define your elements and use them, so it is important to always have the last release. ... -
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ENGRID is a mesh generation software with CFD applications in mind. It supports automatic prismatic boundary layer grids for Navier-Stokes simulations and has a Qt based GUI.
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Open Rocket Toolkit
Simulation of historical and contemporary launch vehicles
...The bundle includes a graphical design tool with an integrated simulation engine for rocket launches. Also included in the bundle is a playback application and a headless driver for logging simulations into spreadsheets. ORT integrates JME3 for 3D rendering.