A minimalistic digital logic simulator
A MATLAB toolbox for exporting publication quality figures
MzDOCK is A Virtual Screening Tool For Drug Discovery Research
General Mission Analysis Tool
XFLR5 is an analysis tool for airfoils, wings and planes
The Open Source CFD Toolbox
An EnergyPlus shell for parametric studies and more ...
Plataform for Simulation of Systems of Electrical Energy
A simple tool for the visualisation of coarse-grained systems
Digital Circuits Design and Simulation
Graphical User Interface for Gromacs
Measurement and Automation Framework + Tool
Frevo is probably the simplest tool for evolutionary design
Model, simulate, and analyze biochemical systems using one tool.
Component, CA, and CCA models; superdense time, DB repo, testing, etc.
Discrete-event simulation modeling software for science and education
Random phenomena generator
Population Propogation in Python. Simulate births, marriages, deaths
Double slit experiment visualization tool loving multicore processors
Neutrality tests using the SNP site frequency spectrum
Automates the building of VANET simulations using SUMO and OMNeT++
Advanced mission simulation and analysis tool
A High-level Utility Package for FMI-based Software Development