Open Source Linux Simulation Software - Page 35

The C++ library Geneva allows to run large scale parametric optimization problems. It can run in serial or multi-threaded mode or in a networked environment. The library currently covers Evolutionary Strategies, Genetic Algorithms and mixed scenarios.

The "GeneticCode" C++ class is designed to generate versions of the genetic code subject to the requirements of the three major models of the genetic code origin and evolution (about these models see, e.g., Koonin & Novozhilov, 2009, IUBMB Life). This class was written specifically to perform statistical test for the paper Makukov & shCherbak (2017), but it might be used for a wider class of studies related to the genetic code. By default, the class "GeneticCode" generates alternative genetic codes, with the reqirement of block structure, and, optionally, with the assumption of stereochemical or biosynthetic models (to impose the assumption of the adaptive model, simply filter the codes using the error_cost() function). See Appendix in Makukov & shCherbak (2017) for the description of the algorithm. The code requires Qt 5. To compile the provided example, run 'qmake' to produce the Makefile, and then run 'make' to compile the executable file. License: Public Domain.

Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of individuals to be simulated or on number of non-predisposing genetic/environmental factors to be considered. The GENS2 tool is able to simulate gene-environment and gene-gene interactions. To make the Simulator more intuitive, the input parameters are expressed as standard epidemiological quantities. GENS2 is written in Python language and takes advantage of operators and modules provided by the simuPOP simulation environment. It can be used through a graphical or a command-line interface.

General Multipurpose Simulation System

A tool for CNC toolpath generation. Model data in, G-Codes out. The system is kept as generic as possible. Machines with up to 9 axis can be defined. Machine simulator included.

A distributed genetic engine which evolves a b&w image vectorizer. The individuals have an "eye", a "brain" and a "hand". The purpose of the project is to get insight of the auto-organization (if any) of drawing primitives in the individual's brain.

Because GAjoe of ATSAS cannot deal with WAXS range, and no parameters can be modified. I made a code by myself to use GA for finding best EOM for SAXS/WAXS. The project need ATSAS crysol and a folder with multiple pdb files to use.

GeoGebra is free and multi-platform dynamic mathematics software for learning and teaching geometry, algebra, statistics, and calculus. Download the free software at http://www.geogebra.org. Find the source code at http://www.geogebra.org/trac

Geometric modeling, mesh generation and definition of boundary conditions for the numerical solution PDE problems by finite element and finite volume methods.

It is a sofware to admin al things about a sportive club, from the trainig to the economy. The first step will take care of individual sports: athletics and cycling. Later we will support team sports like football, basket, handball or rugby.

A large scale multi-agent simulation platform which employs a distributed architecture to achieve stability. Prototype by http://cstep.in

The Global Epidemic Simulator is a platform for modelling directly transmissible human diseases such as influenza, and testing intervention policies that may reduce the duration or severity of an outbreak of such a disease. Building on previous work, this model is spatial and individual-based, using various geographical and demographic data sources to place households at absolute locations, populated with individuals of specific ages who each attend schools or workplaces situated in their vicinity. The significant advance of this project over previous work is the global nature of simulation, the memory and performance requirements of which motivate us towards a multi-core, multi-computer solution.

Godunov finite volume code based on OpenFoam. The code is based on rhoCentralFoam from version 1.7.1

A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.

A Java library and set of tools to quickly and easily manipulate graphs (set of nodes and edges) and dynamic graphs. The principal trait of this library is its ability to manage (create, edit, layout, display) continuously evolving graphs. The development of this project now takes place on Github. Visit the official Graphstream website at http://graphstream-project.org

GGOS is a Graphical Simulator of the gravity interaction written in C. It provides a real-time tracking of the orbit and the user can interact with the universe with a lot of function. There is 2 different version:1(fast)with X11 2(slow)written with GLUT

A simulator for robotic hands. This repository still contains the (somewhat outdated) releases and user manual. For the latest source code (recommended) please go to https://github.com/graspit-simulator

GrassrootsWiki – Water Solutions is a free software for the implementation of water supply projects in rural areas. It enables the design and simulation of networks with discontinued water sources using the computational engine of EPANET.

libPunts is a tiny 3D rendering engine focused on developing physics simulations. Gravetat is a gravity and electromagnetism simulator built over libPunts.

Gravitation is an interactive program, which tries to simulate the dynamics of celestial objects in their mutual gravitational field.

Gravito is an open-source project which intends to simulate any planet system. You enter your planets and your star description then you generate data that you can view with any plotter programm. Gnuplot interface will be provided soon.

Generates and simulates realistic traffic patterns. Focuses on detailed zone model & simplistic characters living at designated zones. Easy-to-use plugin for city and traffic simulators. Demo uses Ogre 3D.

Greenwood Simulator is a Simgrid-based simulator to help researchers on distributed data management studies.

This project documents the development of a suite of ns2 grid network simulators that was done as part of the EC-GIN project. The aim is to refine and develop these simulators to provide input to the larger ns2 and grid simulation community.

GridABM is an easy-to-use toolkit to develop high-performance agent-based models (ABMs) in Repast. GridABM facilitates large-scale simulation of ABM on multicore computers, local computing clusters, or computational grids.