Open Source C Simulation Software - Page 2

Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes. Please check our new repository: https://github.com/CNS-OIST/STEPS

MASyV (Multi-Agent System Visualization) enables one to write agent-based models/cellular automata, eg. in C, visualize them in real time & capture to movie file with MASyVs GUI & message passing lib. Includes examples: Hello World, ants, viral infection

This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.

QSMM, the recursive acronym for "QSMM State Machine Model", is a C library and a set of tools aimed at solving notable problems with Artificial Intelligence: the explainability of model behavior and its restriction to prevent violating a predefined set of rules. To achieve the goals, the library supports specifying model behavior in algorithmic form by the means of nondeterministic programs adapting their own execution according to the reinforcement learning approach. An assembler language for developing the programs includes deterministic jump instructions for imposing constraints on model behavior and nondeterministic jump instructions with automatically adjusted probabilities for allowing variations in the behavior. A proposed higher-level abstraction of model operation is adaptive parsing according to a template grammar. A top-down parser and bottom-up parser supplied with the library compile a template grammar to a nondeterministic assembler program that consumes tokens.

Do you work with chemical reactors? Are you curious about them? ASALI is the open-source code that you are looking for. Chemical reactor models, transport/thermodynamic properties of gases, equilibrium calculations. ASALI couples all these features with an user friendly graphical interface. Modeling chemical reactors has never been so easy.

GENESIS (GEneral NEural SImulation System) is a software platform for the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, large networks, and systems-level processes.

ISL Equilibrium Calculator,which process solid-liquid equilibrium calculation by using Harvie extended Pitzer's ion interaction electrolyte solution model and particle swarm optimization Gibbs free energy minimization (GEM). ISLEC is an efficient tool for solid-liquid equilibrium calculation, and can simulate the crystallization path of seawater and salt lake brines. ISLEC is suitable for related researches and process design.

OpenFVM is a general open source three-dimensional Computational Fluid Dynamics (CFD) solver (for Linux and Windows). It uses the unstructured finite volume method to simulate non-isothermal transient flow. Gmsh is used for pre- and post- processing.

NanoHive is a modular simulator used for modelling the physical world at a nanometer scale. The intended purpose of the simulator is to act as a tool for the study and development of nanotech entities. The project will also focus on the simulation of complex biological applications such as Targeted Drug Delivery by simulating nanowires, magnetic nanoparticles and others. Updates will follow from January 2017.

Simulator for transmission electron microscope images and tilt series of biological samples.

didgmo is a software for DIDGeridoo sound MOdeling. didgmo is capable of predicting the sound characteristica of a didgeridoo by providing its inner geometry. didgmo uses the method of acoustic transmission line modeling.

http://loto.sourceforge.net/ hosts 4 projects of free software related to materials science and physics. They are loto, feram, compasses and xtalgrowth.

TinkerCell is a software for synthetic biology. The visual interface allows users to design networks using various biological "parts". Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.

SPSens is a complete software package written in C that estimates parameter sensitivities for stochastic models of chemical and biochemical reaction networks using Monte Carlo (MC) stochastic simulations. It is possible to estimate sensitivities with respect to system parameters using the following algorithms: finite difference methods (crude monte carlo, common reaction path, coupled finite differences); likelihood ratio methods; and regularized pathwise derivatives. Additionally the package includes basic stochastic simulation algorithms. The package includes several example networks which can be easily modified for other networks. Serial and parallel MPI implementations can be built and called from the command line. The serial implementation of the package can also be called from Matlab via the MEX interface with limited functionality. It supports many user specified options, including the use of antithetic sampling that can be used in some cases to increase efficiency.

That project aims at studying and comparing typical airline IT methods, for instance RM-related algorithms. It works from a Unix/Linux/Mac command-line, and exposes basic APIs. It is being developed in C++, with Python wrappers for some components.

AlgoSim un Logiciel de création, analyse, simulation et exécution des algorithmes. Il ne nécessite aucun apprentissage de langage de programmation. Ce logiciel n'utilise pas un éditeur de texte comme les logiciels classiques de programmation. Ce logiciel peut être utilisé par des débutants pour apprendre la programmation et exercer leurs connaissances. Il peut être utilisé par des professionnel pour tester leurs algorithmes, les vérifier et générer des programme présentables (pseudo-code ou programme Pascal) .

CHLone is a CGNS/SIDS compliant mapping on HDF5. You can read/write CGNS/HDF5 files and access to node through a C API interface or using a Python module.

FDS and Smokeview Development has moved to http://fire.nist.gov/fds please update your bookmarks.

The Virtual Motherboard provides a specification of a TCP/IP based system bus, a motherboard simulator implementing this specifaction, and a collection of reusable device simulators. It is the perfect start to build new custom hardware simulators.

sispread allows to simulate the dynamics of an hypothetic infectious disease within a contact network of connected people. It is intended to help people concerned by public health to easily perform epidemic simulations and to analyze their results.

A graphical interface for solving exterior ballistics problems, based on the excellent GNU exterior ballistics library. This software generates valid 3-DOF solutions to small arms trajectories, including wind and atmospheric corrections.

Sour*eforge.net has become inaccesible to me because of Cl*udflare. The latest version of skunks is on my site: https://matei.one/. 3D realistic driving (not racing) simulation with software rendering, based on Open Dynamics Engine (which is included in all *.tar.gz files so it doesn't have to be downloaded separately). 10 cars (all electric) and 16 tracks are available in version 5.1.0. Cars and tracks can be easily created and modified. Only SDL 1.2 or SDL 2 required besides standard C library. GNU/Linux and Wind0ws executables are available. If using GNU/Linux and SDL 2, it might be necessary to add -lpthread in the comp file, at line 2.

ANUGA is a software implementation of a hydrodynamic model which is specifically designed to model wetting and drying processes. ANUGA is a joint development project between Geoscience Australia (GA) and the Australian National University (ANU). ANUGA is now being developed on github at https://github.com/anuga-community/anuga_core For information on ANUGA please go to http://anuga.anu.edu.au The ANUGA project is described on http://en.wikipedia.org/wiki/ANUGA_Hydro

Libpsht is a collection of algorithms for efficient conversion between maps on the sphere and their spherical harmonic coefficients. It supports a wide range of pixelisations (including HEALPix, GLESP, and ECP). Development for this libary has stopped; its successor is libsharp (http://sourceforge.net/projects/libsharp).

Simulator for Siemens S7-200 PLC. It supports boolean operations, counters, timers, rise up and fall down contacts, and mathematics operations, with integer and real numbers, like sin, cos, tan. Comments and advise are well accepted!