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Showing 16 open source projects for "repeat"
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Image16
Image viewer/editor specialized in astrophotography 16bits processing
Opens/saves TIF, FITS, PNG, XISF, PXM, RAW, JPG, XCF, PSD. AsinH, Sqrt, Ln, Exp and Sqr stretching, HSL and RGB adjusting, Levels and Curves adjusting and Background Extraction for Color Balance, Flatness and Gradient Correction. Arithmetic between images. Resizing and croping. Color Balance based on background, selection or stars B-V (after platesolving). Debayering/Bayering. Inversion, mirroring, rotation, barrel/pincushion correction. RGB alignment/shifting. Erode, Dilate, ... Blurring... -
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Text File Generator
Generate large text files for various testing purposes
... them repeat occasionally. -
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Universal-mer
A CLI tool for k-mer counting with all possible sizes of k at once
Universal-Mer is a k-mer counting tool for all possible size of k at once. More than typical k-mer counting tools, the program can summarize the exact counting result of 1-mers to l-mers at once where l = the length of longest repeated substring in the input sequence where now the maximum length is set to 100000-mers. The program can report exactly the number of all repeat (freq>1) and unique(freq = 1) mers , and the number of all possible substrings of sequences without cutting off any low... -
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adcptools
Set of functions to process acoustic Doppler current profiler data
adcptools is a set of Matlab functions to post-process acoustic Doppler current profiler data. It consists of several low-level function to read out data files and several functions to process data from repeat transect measurements, moored turbulence measurements and horizontal ADCP deployments. -
Shift, the browser that merges all of your web apps into one powerful window.Streamline everything you do online when you install Shift and access thousands of apps without leaving your browser. Connect all of your Gmail, Outlook, and Office 365 accounts and manage everything from one centralized window. Build out your Shift browser with apps that integrate seamlessly so you have ultra-fast access to all the tools you use to stream, shop, work, browse, and stay connected. Shift brings it all together.
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detectMITE
Detection of Miniature Inverted Repeat Transposable Elements
detectMITE - a MATLAB-based tool for detecting miniature inverted repeat transposable elements (MITEs) in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectMITE? Ye C, Ji G, Liang C (2016) detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes. Sci. Rep. 6, 19688. http://www.nature.com/articles/srep19688 Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect... -
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iMSAT represents a full update of the vcf2MSAT program. This command line python program allows for a user to use the polymorphism data generated using SAM- and BAM-tools and a .fasta alignment file to search for polymorphic microsatellite markers (MSATs or STRs). By identifying polymorphic makers, rather than simple repeat regions as previous programs have done, iMSAT greatly increases the speed at which polymorphic MSATs that can be identified -- saving researchers precious time and money...
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easyPAC
easy Primer prediction from Alignments and Consensus sequences
Primer prediction from alignments and consensus sequences. easyPAC applies all standard quality tests to degenerate primer and primer pairs and optionally maps all primer candidates to an arbitrary number of reference files like repeat databases or genomes to ensure target specifity. -
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Boundary Shift Integral
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Project Chronos
Chronos
UPDATE, Check out our new website where we will host all future updates and improvements. The Sourceforge site will no longer be maintained and updated. www.TheChronosProject.com Project Chronos is an open source time lapse rail. It is a fully features system that offers the same level of control as professional systems costing thousands of dollars. It is also the most accurate time lapse system available capable of making accurate movements 1/125th the width of a human hair. And the... -
Software Testing Platform | TesteumTired of bugs and poor UX going unnoticed despite thorough internal testing? Testeum is the SaaS crowdtesting platform that connects mobile and web app creators with carefully selected testers based on your criteria.
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Console based notepad number cruncher makes calculations fast and simple, yet with ample features under the hood. With log turned on, you can record your session on-the-fly from any open instance of the program.
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RIPCAL is a bioinformatics tool for the analysis of repeat-induced point mutation (RIP) of fungi. If you publish work using RIPCAL please cite: Hane & Oliver, BMC Bioinformatics 2008, 9:478
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FONZIE is a bioinformatic tool written in Python developed for the genetic cartography speciality. FONZIE allow as well to find markers on a set of sequences than to find associate oligonucleotides. http://www.biomedcentral.com/1756-0500/3/322/abstra
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STR miner(or SSRdigger) is a SSR searching software which supports both perfect and imperfect SSR search with specified length, match percentage and repeat threshold. With a GUI interface, fasta and MS excel format output, STR miner is user-friendly.
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RADAR stands for Rapid Automatic Detection and Alignment of Repeats in protein sequences. RADAR identifies gapped approximate repeats and complex repeat architectures involving many different types of repeats. Radar has moved to github (https://github.com/AndreasHeger/radar)
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D. R. Kaprekar found an interesting behaviour of four-digit number (say, 6349). Take any number; sort its digits in ascending (3469) and descinding (9643) order; subtract these (9643 - 3469 = 6174). Repeat these steps a couple of times. Surprisingly, you'
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Open ERPS allows patients to be able to register, login and request new repeat prescriptions and make use of Healthcare services. The system allows users to quickly configure an effective web info service including services eg: Collection Service
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