Search Results for "parallel image segmentation"
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Showing 54 open source projects for "parallel image segmentation"
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GeoDMA
Geographic feature extraction and data mining
GeoDMA is a plugin for TerraView software, used for geographical data mining. With a single image, the user can perform segmentation, attributes extraction, normalization and classification. -
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The MITK Workbench is a free, open-source application for medical image visualization, segmentation, registration, and much more. Beyond the Workbench application, MITK is a comprehensive C++ framework for medical image computing. It provides a modular foundation for extending the MITK Workbench with custom plugins or developing your own medical imaging applications and research prototypes.
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Insight Toolkit (ITK). ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions. New location: https://github.com/InsightSoftwareConsortium/ITK
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Octave Forge
A collection of packages providing extra functionality for GNU Octave
Octave Forge is a central location for collaborative development of packages for GNU Octave. The Octave Forge packages expand Octave's core functionality by providing field specific features via Octave's package system. See https://octave.sourceforge.io/packages.php for a list of all available packages. GNU Octave is a high-level interpreted language, primarily intended for numerical computations. It provides capabilities for the numerical solution of linear and nonlinear problems, and... -
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ProStack
ProStack - a platform for image processing and analysis
ProStack - a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. RPMs are available at https://build.opensuse.org/project/repositories/home:mackoel:compbio -
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FEMM_PMSM_GUI_V2 1.FIX Parallel emf voltage problem and ind Calculation 2.add Arkkio torque Calculation 3.Support for segmentation models (sliding band mode only) 4.Supports iron loss calculation(Supported in full electrical cycle and sliding band modes; not supported in standard mode) #Add new FEMM_DXF_SET_Driver FEMM PMSM Motor GUI — V1 A multi-functional desktop GUI that automates finite-element (FEMM) analysis of permanent-magnet synchronous motors (PMSM/IPM). ...
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ShinyCardinal
Mass spectrometry imaging data analysis software tool
ShinyCardinal is an open-source and vendor-neutral software that covers all steps in MSI data analysis. It leverages the R package Cardinal to enhance its functionalities by introducing several additional important features, such as the removal of background noises and matrix peaks, deisotoping, absolute quantification, network analysis, and metabolite identification. ShinyCardinal is built as a desktop application with a conveniently designed graphic user interface to provide users a... -
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TomoJ
ImageJ plugin to perform Electron Tomography
TomoJ is an ImageJ plug-in for tomographic reconstruction. It was designed for electron tomography, however any acquisition with parallel beam should work. TomoJ proposes the preprocessing and the registration of tilt-series prior to 3D reconstructions (WBP, ART, SIRT, OS-SART, compressed sensing). TomoJ is written in Java, the computations are multithreaded and reconstruction can be performed on CPU or GPU (OpenCL). registration is described in: Journal of Structural Biology: X. 2020, Volume 4. ... -
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...(Disclaimer: Processing time depends on compute hardware) Typical processing time for 100mb .las is about 2 seconds. 25mb .laz file process in about the same times. Files are processed in parallel using available CPU cores. Pre-built Windows x64 installer available at https://buymeacoffee.com/nathancrews/e/255641
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tdsft
TDSFT (Two-Dimensional Segmentation Fusion Tool)
Given multiple segmentations related to the same tumor, statistical metrics could be exploited to determine the most reliable one, from there identified as ground truth. Numerous algorithms have been developed over time, but to date, there is no validated method for this procedure. Therefore, research is still active in this area. Two-Dimensional Segmentation Fusion Tool (TDSFT) is an open-source tool developed in MATLAB and distributed as a standalone application for MAC, Linux, and... -
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InVesalius
3D medical imaging reconstruction software
InVesalius is a free, open-source medical imaging application designed for three-dimensional reconstruction from computed tomography and magnetic resonance imaging scans. It converts sequences of two-dimensional DICOM images into detailed anatomical models. The software supports medical image visualization, segmentation, and measurement through an interactive graphical environment. Users can isolate tissues using threshold ranges, watershed segmentation, and manual editing tools. It provides high-quality volume rendering and three-dimensional surface generation for examining anatomical structures. Reconstructed models can be exported in formats such as STL, OBJ, and PLY for further processing or 3D printing. ... -
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Perceptron
The birth of modern video feedback art.
Perceptron is a video feedback engine with a variety of extraordinary graphical effects. Perceptron is an endless flow of transforming visuals. Perceptron * recursively transforms images and video streams in realtime and produces a combination of Julia fractals, IFS fractals, and chaotic patterns due to video feedback * evolves geometric patterns into the realm of infinite details and deepens the thought * records animations (movies) * saves and opens presets... -
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Semantic Segmentation Editor
Web labeling tool for bitmap images and point clouds
A web-based labeling tool for creating AI training data sets (2D and 3D). The tool has been developed in the context of autonomous driving research. It supports images (.jpg or .png) and point clouds (.pcd). It is a Meteor app developed with React, Paper.js, and three.js. -
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IQM
Scientific Image and Signal Analysis in Java
IQM has moved to GitHub -
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TOFSIMS
R/Bioconductor toolkit for mass spectrometry data
...It also interoperates with Bioconductor’s imaging stack (e.g. EBImage) so users can apply segmentation and image analysis operations on mass images. -
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UmUTracker
A MATLAB program for 2D particle tracking or 3D DHM based tracking.
We present a versatile and fast MATLAB program (UmUTracker) that automatically detects and tracks particles by analyzing long video sequences acquired by either light microscopy or digital holography microscopy (DHM). Our program finds the 2D particle center position using an isosceles triangle transform and the axial position by a fast implementation of Rayleigh-Sommerfeld numerical reconstruction algorithm using a one dimensional radial intensity profile. *Updates v1.1: 2017/11/21- Bug... -
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Composight is a cross-platform toolkit for 3D-image processing in the domain of composite materials science. It is written in C++ and provides small, problem-specific applications for viewing, filtering and segmentation of volumetric data such as micro-CT scans. The main objective is not to provide yet another complex application for volume data visualization and medical image processing.
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Freemat is an interpreted, matrix-oriented development environment for engineering and scientific applications, similar to the commercial package MATLAB. Freemat provides visualization, image manipulation, and plotting as well as parallel programming.
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WrapImaJ
Multi-platform API for Image Processing systems in Life Sciences
WrapImaJ purposes to be a multi-platform wrapper for different Image Processing systems for: - using the Java programming language. The purpose of WrapImaJ is not to combine an exhaustive collection of all functionalities of different imaging system, but to offer a simple, concise Application Programming Interface (API) - allowing to develop imaging software, the source code of which is independent from the underlying imaging system on which it relies. In it's current form, it... -
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3DimViewer
3DimViewer is a lightweight 3D viewer of medical DICOM datasets.
3DimViewer is a lightweight 3D viewer of medical DICOM datasets that is distributed as open source software. The viewer is multiplatform software written in C++ that runs on Windows, Mac OS X and Linux systems. 3DimViewer source codes are available on Bitbucket (https://bitbucket.org/3dimlab/3dimviewer). Video tutorials can be found on YouTube (https://www.youtube.com/playlist?list=PLCvwUmKRw9ZO4YexLKEXmw_2jPo-kXVRn). -
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Advanced Simulation Library
Free multiphysics simulation software package
...Its computational engine is based, among others, on the Lattice Boltzmann Methods (http://en.wikipedia.org/wiki/Lattice_Boltzmann_methods) and is written in OpenCL (http://en.wikipedia.org/wiki/OpenCL) which enable extraordinarily efficient deployment (http://asl.org.il/benchmarks) on a variety of massively parallel architectures, ranging from inexpensive FPGAs, DSPs and GPUs up to heterogeneous clusters and supercomputers. The engine is hidden entirely behind C++ classes, so that no OpenCL knowledge is required from application programmers. ASL can be utilized to model various coupled physical and chemical phenomena and employed in a multitude of fields: computational fluid dynamics, virtual sensing, industrial process data validation and reconciliation, image-guided surgery, computer-aided engineering, high-performance scientific computing, etc.. -
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Gimias
Graphical Interface for Medical Image Analysis and Simulation
GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development. -
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SegmentIt
Interactive Image Segmentation Tool
SegmentIt is an interactive image segmentation tool that allows to switch back and forth between the watershed approaches (watershed from markers and hierarchical watershed) so the user can explore the strengths of both. -
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as3delaunay
Delaunay triangulation and Voronoi diagram for Flash Builder 4 project
...It is based on the well-known work of Raymond Hill and offers developers an efficient way to create and manipulate geometric structures for use in Flash and other AS3-based environments. The library enables users to generate Voronoi diagrams from a set of input points, allowing applications such as procedural map generation, image segmentation, and spatial partitioning. By handling complex geometric relationships automatically, it simplifies the process of building interactive or data-driven visualizations. The project emphasizes performance and mathematical accuracy while maintaining readability for developers working in ActionScript. Its codebase serves as a reliable foundation for anyone implementing geometry-based algorithms or graphical systems within AS3 projects. -
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BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
