Showing 73 open source projects for "ns2 code with algorithm"

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  • 1
    AlgoSim

    AlgoSim

    AlgoSim : création, analyse et exécution des algorithmes

    AlgoSim un Logiciel de création, analyse, simulation et exécution des algorithmes. Il ne nécessite aucun apprentissage de langage de programmation. Ce logiciel n'utilise pas un éditeur de texte comme les logiciels classiques de programmation. Ce logiciel peut être utilisé par des débutants pour apprendre la programmation et exercer leurs connaissances. Il peut être utilisé par des professionnel pour tester leurs algorithmes, les vérifier et générer des programme présentables (pseudo-code ou...
    Downloads: 20 This Week
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  • 2
    cfMesh

    cfMesh

    A library for polyhedral mesh generation

    ...It is already a part of foam-extend, OpenFOAM for Windows, Caelus and OpenFOAM+ released by ESI. This repository is intended for contribution and collaborative development. If you have a new meshing algorithm or interested in contributing to cfMesh, do not hesitate to contact us. Please note that this code is not the same as CF-MESH+, which is a commercial product offered by Creative Fields Holding.
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    Downloads: 191 This Week
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  • 3
    gendasm

    gendasm

    Generic Code-Seeking Diassembler with Fuzzy-Function Analyzer

    GenDasm is a Generic Code-Seeking Diassembler engine. It allows you to enter known starting vectors for a given code image for the micro. It will disassemble the code and follow through branches to assist in the separation of code and data. Its included Fuzzy Function Analyzer companion uses a DNA Sequence Alignment Algorithm to locate similar code in multiple binaries to facilitate reverse-engineering and/or code recovery. ...
    Downloads: 0 This Week
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  • 4
    Bandicoot

    Bandicoot

    fast C++ library for GPU linear algebra & scientific computing

    * Fast GPU linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use * Provides high-level syntax and functionality deliberately similar to Matlab * Provides an API that is aiming to be compatible with Armadillo for easy transition between CPU and GPU linear algebra code * Useful for algorithm development directly in C++, or quick conversion of research code into production environments * Distributed under the permissive Apache 2.0 license, useful for both open-source and proprietary (closed-source) software * Can be used for machine learning, pattern recognition, computer vision, signal processing, bioinformatics, statistics, finance, etc * Downloads: http://coot.sourceforge.io/download.html * Documentation: http://coot.sourceforge.io/docs.html * Bug reports: http://coot.sourceforge.io/faq.html * Git repo: https://gitlab.com/conradsnicta/bandicoot-code...
    Downloads: 13 This Week
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  • 5
    calculatorpp

    calculatorpp

    Calculator++

    Written in C++ (using template). Calculator++ is a application/library for Window (POSIX). The core of code is adaptable for posix. This algorithm support: + built-in operator + built-in functions + run-time functions and variables definition + run-time units system, units with prefix + constants definition + Pretty mathematical expressions - Process ascii files (dev) - vector and matrix (dev) - graph 2D and 3D (dev) - vector graph (dev) - symbolic calculate (dev) - Animations (dev)
    Downloads: 0 This Week
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  • 6
    LabRPS

    LabRPS

    Random phenomena generator

    This is an official mirror of LabRPS. Code and release files are primarily hosted on https://github.com/LabRPS/LabRPS and mirrored here LabRPS aims to be a tool for the numerical simulation of random phenomena such as stochastic wind velocity, seismic ground motion, sea surface ... etc. It can be in a wide range of uses around engineering, such as random vibration or vibration fatigue in mechanical engineering, buffeting analysis in bridge engineering.... LabRPS is mainly to assist...
    Downloads: 1 This Week
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  • 7
    miRDeep*

    miRDeep*

    MiRDeep*

    Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction.
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    Downloads: 6 This Week
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  • 8
    Advanced Trigonometry Calculator

    Advanced Trigonometry Calculator

    Precision Trigonometry: Advanced Calculator for Complex Math

    Advanced Trigonometry Calculator is equipped with a user-friendly interface that allows for easy input of problems and instant computation. Professionals such as engineers who need to perform advanced trigonometric calculations in their work will find this tool extremely useful. More info by clicking below: https://advantrigoncalc.sourceforge.io/ Advanced Trigonometry Calculator was only and always only developed by the Portuguese Renato Alexandre dos Santos Freitas. Also author of...
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    Downloads: 12 This Week
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  • 9

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support...
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    Downloads: 147 This Week
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  • 10

    yafu

    Automated integer factorization

    Check yafu on github for the latest code. YAFU (with assistance from other free software) uses the most powerful modern algorithms (and implementations of them) to factor input integers in a completely automated way. The automation within YAFU is state-of-the-art, combining factorization algorithms in an intelligent and adaptive methodology that minimizes the time to find the factors of arbitrary input integers.
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    Downloads: 197 This Week
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  • 11
    SAR Synthetic Aperture Radar

    SAR Synthetic Aperture Radar

    Collection of MATLAB codes, simulations, and summaries

    This repository is a collection of MATLAB codes, simulations, and summaries related to Synthetic Aperture Radar (SAR), InSAR, and PolSAR. The author compiled implementations of classic SAR imaging algorithms (e.g. Range-Doppler (RD) algorithm, Chirp Scaling (CS) algorithm), synthetic scenes, InSAR (interferometric) simulation including multiple terrain types (flat, conical), and polarization calibration techniques (Whitt, PARC, Quegan, Ainsworth). The readme states that these were...
    Downloads: 0 This Week
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  • 12
    LoopMatcher

    LoopMatcher

    Find sequence-specific stem-loops in FASTA and GenBank files.

    LoopMatcher is a bioinformatics tool that searches for hairpin structures in cDNA / mRNA sequences (in FASTA, GenBank or Vienna format) with specific consensus sequences in the loop. It uses RNAfold to predict sequence structure and UShuffle to generate random sequences with a defined k nucleotide frequency. Also, sequences in GenBank format can be downloaded directly from NCBI using the NCBI access ID. Requirements JAVA Runtime 8. It's highly recommended to have a multicore processor...
    Downloads: 0 This Week
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  • 13

    COHCAP

    City of Hope CpG Island Analysis Pipeline

    COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through GitHub. 2) In addition to the original NAR paper, please see the following links: Benchmarks: http://www.nature.com/protocolexchange/protocols/2965#/introduction Protocol Exchange Files: http://sourceforge.net/projects/cohcap/files/Protocol_Exchange_Example.zip 3) Custom Annotation Files (including EPIC Array): https://sourceforge.net/projects/cohcap/files/additional_Bioconductor_annotations.zip/download
    Downloads: 0 This Week
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  • 14
    Electronic Circuit Optimization

    Electronic Circuit Optimization

    Optimer: a SPICE base electrical/ electronic circuit optimization tool

    This project is dedicated to the optimization of (any) electrical and electronic circuits and components using evolutionary and heuristic algorithms incorporated with SPICE simulators (such as HSPICE, ngSPICE, etc.). We provide Optimer, which is a user graphical interface for circuit design and optimization. Website: https://www.circuitoptimization.com/ E-mail: contact@circuitoptimization.com/
    Downloads: 0 This Week
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  • 15
    Jenetics: Java Genetic Algorithm Library
    The source code has been migrated and is now hosted on Github: https://github.com/jenetics/jenetics Jenetics is an advanced Genetic Algorithm, Evolutionary Algorithm and Genetic Programming library, respectively, written in modern day Java. It is designed with a clear separation of the several algorithm concepts, e. g. Gene, Chromosome, Genotype, Phenotype, Population and fitness Function.
    Downloads: 0 This Week
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  • 16
    NOMAD is a C++ code that implements the MADS algorithm (Mesh Adaptive Direct Search) for difficult blackbox optimization problems. Such problems occur when the functions to optimize are costly computer simulations with no derivatives.
    Downloads: 0 This Week
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  • 17

    JSiteDescriptor

    Binding site descriptor generation for SVM based classification.

    A set of java programs that extract coordinate and chemical information from PDB files. The binding site regions are extracted using grid based scheme. For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too).
    Downloads: 0 This Week
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  • 18
    Designed to help you with nonlinear, multidimensional, multi-parameter regression, using the Levenberg-Marquardt algorithm. The regression model can be set up using the input syntax of most modern cas. Full featured visualization and data edit mask. Regression Easy needs help. Especially need to catch exceptions and give reasonable error messages. (In the moment, the standard error handler is invoked. Simply click "resume" on any error.) For newest binary builds, look in the "/bin" directory of the Subversion distribution (code section). ...
    Downloads: 0 This Week
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  • 19

    GenCodeGenerator

    C++ class to generate biologically plausible genetic codes

    The "GeneticCode" C++ class is designed to generate versions of the genetic code subject to the requirements of the three major models of the genetic code origin and evolution (about these models see, e.g., Koonin & Novozhilov, 2009, IUBMB Life). This class was written specifically to perform statistical test for the paper Makukov & shCherbak (2017), but it might be used for a wider class of studies related to the genetic code.
    Downloads: 0 This Week
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  • 20

    MSU's Sparse Fourier Repository

    The Home of DMSFT, AAFFT, GFFT, and MSFFT.

    ...MSFFT, implemented by David Lawlor and Bosu Choi. This code is fast, but is not terribly easy to use. The algorithm is robust to some noise, but requires a lot of parameter tuning. Enjoy at your own risk :), Mark Iwen
    Downloads: 0 This Week
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  • 21
    OpenRS

    OpenRS

    road noise auralization

    This software can perform auralizations of a car pass-by. The auralization algorithm is based on Nord2000 and ISO9313. Correction for winds is not implemented. You can export the sounds to a wave-file and save your project. The installer works for for windows. If you want to run the software on a Mac or Linux, you might have to compile the code.
    Downloads: 0 This Week
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  • 22

    PSICOV

    The unofficial binary for PSICOV: Protein Sparse Inverse COVariance

    PSICOV (Protein Sparse Inverse Covariance estimation program) is a coevoultion algorithm applied to very large (typically >=1000 sequences) multiple sequence alignments for precise protein structural contact prediction. This is the unofficial precompiled Windows binary for PSICOV compiled by Chengxin Zhang at Fudan University. The source code is copyrighted by David T. Jones, University College London.
    Downloads: 0 This Week
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  • 23
    INTEGRATE
    INTEGRATE: Calling gene fusions with exact fusion junctions and genomic breakpoints by combining RNA-Seq and WGS data. To download source code, reference manual and test case, please go to 'Files'. Also refer to 'Wiki' for details.
    Downloads: 1 This Week
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  • 24
    Density-ratio based clustering

    Density-ratio based clustering

    Discovering clusters with varying densities

    This site provides the source code of two approaches for density-ratio based clustering, used for discovering clusters with varying densities. One approach is to modify a density-based clustering algorithm to do density-ratio based clustering by using its density estimator to compute density-ratio. The other approach involves rescaling the given dataset only. An existing density-based clustering algorithm, which is applied to the rescaled dataset, can find all clusters with varying densities that would otherwise impossible had the same algorithm been applied to the unscaled dataset. ...
    Downloads: 2 This Week
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  • 25
    Attitude Estimator

    Attitude Estimator

    A C++ implementation of a nonlinear 3D IMU fusion algorithm.

    ...Great emphasis has been placed on having a very efficient, yet totally numerically and algorithmically robust implementation of the filter. The code size has also been kept to a minimum, and has been extremely well-commented. The programmatic interface has also been made as easy as possible. Please refer to the extensive documentation of the library for more information on its capabilities and usage caveats.
    Downloads: 0 This Week
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