Search Results for "loops"
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Showing 22 open source projects for "loops"
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JAX
Composable transformations of Python+NumPy programs
With its updated version of Autograd, JAX can automatically differentiate native Python and NumPy functions. It can differentiate through loops, branches, recursion, and closures, and it can take derivatives of derivatives of derivatives. It supports reverse-mode differentiation (a.k.a. backpropagation) via grad as well as forward-mode differentiation, and the two can be composed arbitrarily to any order. What’s new is that JAX uses XLA to compile and run your NumPy programs on GPUs and TPUs. ... -
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The auditory modeling toolbox (AMT) is a Matlab/Octave toolbox for the development and application of auditory computational models. Over 50 auditory models implemented in Matlab, Octave, C, C++, and Python can be run from Matlab and Octave, on Windows and Linux. The AMT provides a well-structured in-code documentation, includes auditory data required to run the models. It integrates functionality to reproduce the model predictions. Model implementations can be evaluated in two stages,...
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p3d
General data-reduction tool for fiber-fed integral-field spectrographs
...The tool is built about the proprietary software IDL (Harris/EXELIS; see http://www.harrisgeospatial.com), but can be used without any license. Most slowly running loops are implemented in parallelized C (OpenMP). -
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ccgsl
Use Gnu Scientific Library as if it were writtem in C++.
The ccgsl provides simple C++ wrappers for the GNU Scientific Library. It uses Java-like shared-pointer classes in place of structs to avoid direct memory allocation/freeing and to work better with the STL. It lets you construct functions for optimisation, root-finding and the like from C++ member functions, making it easier to integrate with existing C++ code. It also provides C++ exceptions. -
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LoopMatcher
Find sequence-specific stem-loops in FASTA and GenBank files.
LoopMatcher is a bioinformatics tool that searches for hairpin structures in cDNA / mRNA sequences (in FASTA, GenBank or Vienna format) with specific consensus sequences in the loop. It uses RNAfold to predict sequence structure and UShuffle to generate random sequences with a defined k nucleotide frequency. Also, sequences in GenBank format can be downloaded directly from NCBI using the NCBI access ID. Requirements JAVA Runtime 8. It's highly recommended to have a multicore processor... -
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DSPatch
The Refreshingly Simple C++ Dataflow Framework
Webite: http://flowbasedprogramming.com DSPatch, pronounced "dispatch", is a powerful C++ dataflow framework. DSPatch is not limited to any particular domain or data type, from reactive programming to stream processing, DSPatch's generic, object-oriented API allows you to create virtually any dataflow system imaginable. *See also:* DSPatcher ( https://github.com/MarcusTomlinson/DSPatcher ): A cross-platform graphical tool for building DSPatch circuits. DSPatchables (... -
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PyRobot
An Open Source Robotics Research Platform
...It also plugs into simulation backends, letting you prototype perception and control algorithms before deploying on physical robots. By standardizing common operations and providing examples, PyRobot reduces boilerplate and encourages best practices in perception-control loops, data collection, and benchmarking. -
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Acoustic Research Tool (ART)
Acoustic Simulation Library for Frequency and Time Domain Simulations.
...Parameters can be specified symbolically by expressions containing other parameter values or global variables. Dependencies between parameters are resolved at run time. However, MuParserX expressions are compiled at design time. Zero-delay loops are detected and reported. -
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MathFu
C++ math library developed primarily for games focused on simplicity
MathFu is a small, header-only C++ math library optimized for games and real-time graphics on mobile and desktop. It provides fixed-size vector, matrix, and quaternion types with APIs that mirror the operations you actually use in inner loops—dot, cross, normalize, transforms, and projections. Implementations are carefully tuned to leverage SIMD instruction sets such as SSE and NEON while preserving a clean fallback path for portability. Because types are fixed at compile time, the compiler can aggressively inline and unroll code, producing predictable performance and tiny binaries. ... -
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PUB! Programmable USB Button
Program a button to send keystrokes to your computer
PUB! is a Programmable USB Button on which you can program with a sequence of keystrokes. When you press the button those keystrokes are "replayed" over a USB connection. The button is programmed using an innovative and slightly quirky interface that does not require any custom software to be installed on your computer. All you need is a text editor like Notepad or gedit. -
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scFvMiner
Scripts for analysing NGS data
These scripts written in java can be used for deep sequencing analysis of the scFv antibodies from a synthetic antibody library and yields complete sequence information on the randomized areas of antibodies enriched from the library by phage display. The methods are descriped in Lövgen, J., Pursiheimo, J.P., Pyykkö, M., Salmi, J. & Lamminmäki, U. (2016) Next generation sequencing of all variable loops of synthetic single framework scFv – application in anti-HDL antibody selections. New Biotechnology 33:790-796. -
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Behaviour Control Framework
A C++ framework that uses inhibition trees for behaviour control.
...This documentation is well worth a read before you decide if the library is for you! The structure and implementation of this library focuses on the application of the inhibition-based behaviour control architecture to real-time control loops, but can reasonably be adapted for a wide variety of other artificial intelligence applications. Emphasis has been placed on having very low overhead so as not to hurt overall system performance, while still maintaining ease of use. I welcome all feedback, suggestions and bug reports! Email: pallgeuer[at]ais.uni-bonn.de -
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State Controller Library
A C++ framework that implements generalised finite state machines.
The State Controller Library is a generic platform-independent C++ framework that allows finite state machines and multi-action planning generalisations thereof to be realised. The structure and implementation of this library focuses on the application of finite state machines to real-time control loops, but can be reasonably adapted for virtually any other application, even completely unrelated to control systems. An emphasis has been placed on having very low overhead so as not to hurt overall system performance no matter where this library is used, while still maintaining ease of use. Code size has also been kept to a minimum. ... -
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Gekko Timeseries Software
Timeseries handling, and solving of large-scale economic models
Gekko Timeseries Software is a free time-series oriented software package for timeseries handling, and solving and analyzing large-scale economic models. Since 2009, Gekko is being used by Danish ministeries, banks, interest groups and universities, for the simulation of economic and energy-related models. The software runs under Windows (.NET), and is open source (GNU GPL) -
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FamSeq
Variant calling on the basis of pedigree information
...To accommodate variations in data complexity, FamSeq consists of three distinct implementations of the Mendelian genetic model: the Bayesian network algorithm, Elston-Stewart algorithm and Markov chain Monte Carlo algorithm. To make the software efficient and applicable to large families, we parallelized the Bayesian network algorithm that copes with pedigrees with inbreeding loops without losing calculation precision on an NVIDIA® graphics processing unit. -
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Route11
C++ flow-based metaprogramming library
Route11 is a powerful C++ flow-based metaprogramming library that allows you to create and route complex dataflow systems at compile-time. Route11 uses Template Metaprogramming to construct complex "process systems" defined by static relationships between "process primitives". A process primitive is a generic host class that inherits a "process policy". The process policy defines the specific behavior of a process primitive. The general term: "process" can refer to either one of these... -
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OpenSQUID
Superconducting QUantum Interference Devices (SQUIDs) control software
OpenSQUID is a Python framework for the control of SQUID (superconducting quantum interference device) readout electronics. It currently supports the Star Cryoelectronics PCI-1000 electronics with PFL-100 and PFL-102 flux-locked loops. Simultaneous operation of both PFL-100s and PFL-102s from a single PCI-1000 is supported. More features are under development. The software is implemented in Python and aims to be easily integrated with user-defined measurement and control code. -
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Differential-algebraic simulator in python. Process and control systems are modelled w/ bloc diagrams. It allows algebraic loops, has an automatic steady-state computation, detects singular systems, and uses variable time-step transient integration.
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IPAT-S is a scenario modeling language. Use it for rapid development of quantitative strategic scenarios for governments, agencies, businesses, etc. using a fast and compact interpreted language. Package includes IPAT Studio development environment.
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simple digital logic circuit simulator, using only NAND gates. written as a standalone app for your web browser
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PyGraphMath is a system for the manipulation of symbolic and numerical expr., equations, vectors .. (Maxima). Main focus lies on direct 3D graphical viewport (openGL) which displays math objects. Syntax is "pseudo-python" and supports objects, loops .. *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** OBSOLETE: please use instead http://www.sagemath.org/ with PyODE (or pyphyssim/PPE) *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** ***
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C++ library for configuring and simulating the dynamics of multibody systems. Currently the class of tree structured systems are supported (with closed loops coming soon).
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