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Showing 54 open source projects for "article"
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TabuVis
An Interactive Visualisation for Tabular Data
...://www.sciencedirect.com/science/article/pii/S2468502X20300358 https://dl.acm.org/doi/pdf/10.1145/2968220.2968248 https://link.springer.com/content/pdf/10.1007/s11432-013-4870-1.pdf https://dl.acm.org/doi/pdf/10.1145/2397696.2397705 -
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Divide and Conquer Treemaps
Divide and Conquer Treemap Visualisation
The project develops new new techniques and algorithms for quickly partitioning and visualizing very large hierarchical structures within a variety of arbitrary shapes and space using Divide and Conquer approach for Treemaps. Related publications: https://www.sciencedirect.com/science/article/pii/S1045926X1500066X https://dl.acm.org/doi/pdf/10.1145/2493102.2493112 -
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Crossref Author Check
Web app to cross-check publication/authorship against CrossRef
This tool retrieves CrossRef information on article type, authorship, print date, subject area, etc. for publications specified by DOI and/or PubMed IDs (max. 100). The tool also tallies the order of authorship for a specified author. -
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AGLAEMap
Read EDF File / view mapping
The proper way to quote AGLAEMap is: Programs for visualization, handling and quantification of PIXE maps at the AGLAE facility L. Pichon, T. Calligaro, Q. Lemasson, B. Moignard, C. Pacheco Nuclear Instruments and Methods in Physics Research Section B, Volume 363, 15 November 2015, Pages 48-54 doi:10.1016/j.nimb.2015.08.086 Due to the copyright transfer to the publisher, the online availability of the article will depend on your subscription to ScienceDirect. The abstract should... -
Red Hat Ansible Automation Platform on Microsoft AzureDeploy Red Hat Ansible Automation Platform on Microsoft Azure for a strategic automation solution that allows you to orchestrate, govern and operationalize your Azure environment.
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Gwyscope
Open hardware SPM controller with advanced sampling support.
Gwyscope is a low cost, open hardware, Digital Signal Processor (DSP) suitable for Scanning Probe Microscopy measurements, focusing on demonstrating the concept of adaptive scanning, general XYZ data acquisition and statistical data processing on the controller level. More details can be found in: M. Valtr et al., Scanning Probe Microscopy controller with advanced sampling support, HardwareX, Volume 15, e00451 https://www.hardware-x.com/article/S2468-0672(23)00058-5/fulltext... -
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Gemi
PCR primers / probes design from multiple & degenerate sequences
... PCR (qPCR, rt-PCR, etc.), and Sanger sequencing. Gemi can parse large dataset of sequences efficiently. Article: Gemi: PCR primers prediction from multiple alignments Comparative and functional genomics 2012;2012:783138 DOI: https://doi.org/10.1155/2012/783138 PMID: https://www.ncbi.nlm.nih.gov/pubmed/23316117 PMCID: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3535827/ -
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Gnaural
Entrain your brain!
A programmable audio generator intended as an aural aid to meditation, implementing the binaural beat principle as described in Gerald Oster's Oct. 1973 Scientific American article "Auditory Beats in the Brain." -
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GRAMPC
A gradient-based augmented Lagrangian framework for embedded NMPC
... that comes along with the source files. More details about the algorithm and its performance can be found in the corresponding article published in Optimization and Engeneering. The article is available online under open access at: https://doi.org/10.1007/s11081-018-9417-2. Please cite the paper when you are using results obtained with GRAMPC. -
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MVSE
Estimator of climate-driven, mosquito-borne viral suitability index
..., vector and human priors, suitability can be estimated for specific regions, hosts, vectors and viral species. MVSE v0.3 and v1.01r are available for download in this repo. UPDATE Oct/2021: note that a correction has been made to the documentation of v1.01r. The most recent version is the file "MVSE_v1.01r_corrections_to_documentation.zip". No changes have been made to the code itself. Article for original v0.3: https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.132 -
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This data set contains data for virtual experiments for an undergraduate course from the Pontificia Universidad Católica del Perú. It constitutes the Supporting Information for a scientific article entitled "Application of blended physical-virtual experiments and flipped instruction in a fundamental fluid mechanics course: a design-based research study" submitted to Computer Applications in Engineering Education. The educational material contained in this dataset is shared under the GNU General...
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...://minimpy.sourceforge.net MinimPy has been fully described in the following article: Saghaei, M. and Saghaei, S. (2011) Implementation of an open-source customizable minimization program for allocation of patients to parallel groups in clinical trials. Journal of Biomedical Science and Engineering, 4, 734-739. doi: 10.4236/jbise.2011.411090. Available at: http://www.scirp.org/journal/PaperInformation.aspx?PaperID=8518
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gsasnp2
PubMed ID: 29562348 / DOI: 10.1093/nar/gky175
* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data... -
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TauFactor
MatLab App for calculating the tortuosity factor of microstructure
Please contact the author at sjc08@ic.ac.uk for any questions or if you wish to cite this application in a academic study. Journal paper available here: http://www.sciencedirect.com/science/article/pii/S2352711016300280 TauFactor is a MatLab application for efficiently calculating the tortuosity factor, as well as volume fractions, surface areas and triple phase boundary densities, from image based microstructural data. The tortuosity factor quantifies the apparent decrease in diffusive... -
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dBEAST
digest BEAST
This code has been used in the study: Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa; PLoS Pathogens 2019 https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1007976 Please note that the code includes test input data that does not necessarily reproduce the results included in the manuscript. -
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nvdecompression
A new non-haldanian model of decompression
The model itself is described in the following article: Boudinet P. A New Dynamical Theory of Decompression. Advances in Research 17(1):1-20. 2018. It is available here: http://www.journalrepository.org/media/journals/AIR_31/2018/Nov/Boudinet1712018AIR44062.pdf We provide here a small C library corresponding to this model. -
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..., please consider citing the following article: https://doi.org/10.1109/IranianCEE.2017.7985315
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UMLS::Query is an umbrella for projects that create measures of semantic similarity for the biomedical domain. Our current project is UMLS-Interface and UMLS-Similarity. Our JBI-2007 article was based on Semantic-Similarity and Snomed-Interface.
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Crosshub
Multi-way analysis of The Cancer Genome Atlas (TCGA) project datasets
.... For details, see the manual or article G.S. Krasnov et al. NAR 2016, Pubmed ID: 26773058 -
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detectMITE
Detection of Miniature Inverted Repeat Transposable Elements
... and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. PLoS ONE 9(11): e113349. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113349 [3] detectMITE user manual Please visit the Wiki page of this website. [4] detectMITE Q&A For Q&A, please visit the Blog page of this website. [5] Update history To see the update history, go to https://sourceforge.net/p/detectmite/wiki/UpdateHistory/ -
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PBSuite
Software for Long-Read Sequencing Data from PacBio
This currently hosts two projects created and maintained by Adam English. PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads. ----- PBJelly ----- Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768 PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high... -
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AXYZ
Newsfeed aggregator
The article explains the design and the characteristics of a new open source content aggregation system. Among the features of the program, stands out a new processing engine of syndication channels, monitoring capability of information recovery in real time, the possibilities of the configuration of aggregator behavior, automatic classification of contents and new models for representation of information from relational interactive maps. On the other hand, the aggregation program, which named... -
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Density-ratio based clustering
Discovering clusters with varying densities
... densities that would otherwise impossible had the same algorithm been applied to the unscaled dataset. Reference: Zhu, Y., Ting, K. M., & Carman, M. J. (2016). Density-ratio based clustering for discovering clusters with varying densities. Pattern Recognition. http://www.sciencedirect.com/science/article/pii/S0031320316301571 -
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CT collimation measurements using CR plates. Please reference Bjarnason TA, Yang CY. CT radiation profile width measurement using CR raw data. Journal of Applied Clinical Medical Physics. 2015;16:501-507. Available from: http://www.jacmp.org/index.php/jacmp/article/view/5512
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RoWordNetLib
Java API for the Romanian WordNet
.../ **** Please cite: Dumitrescu, Ștefan Daniel. RoWordNetLib - The first API for the Romanian WordNet. In Proceedings of the Romanian Academy, Series A (The Publishing House of the Romanian Academy). vol. 16, no. 1, pp. 87--94, 2015 Article PDF at: http://www.acad.ro/sectii2002/proceedings/doc2015-1/12-Dumitrescu.pdf It's free for research use. Use the demo.java as a quick-start guide for using this software. -
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PromKappa 2.0 (DNA patterns in Java)
PromKappa 2.0 (Java source code and bin)
A Java adaptation of DNA patterns based on the article "Eukaryotic genomes may exhibit up to 10 generic classes of gene promoters". by Ilie Guta (Java source code for DNA patterns)