Search Results for "algorithm" - Page 5
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Showing 450 open source projects for "algorithm"
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Desktop and Mobile Device Management SoftwareDesktop Central is a unified endpoint management (UEM) solution that helps in managing servers, laptops, desktops, smartphones, and tablets from a central location.
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ScriptSure Cloud E-PrescribingScriptSure Cloud ERX allows users to electronically send prescriptions to all retail and mail order pharmacies attached to the Surescripts electronic network.
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RAtom
solves nonlinear Kohn-Sham equation for the neutral atom.
...The program is implemented in C++, it runs as a single thread. The implemented algorithm is described in the following papers: 1. Z. Romanowski, "Adaptive solver of a Kohn-Sham equation for an atom", Modelling Simul. Mater. Sci. Eng. vol. 17, 045001 (2009) 2. Z. Romanowski, "Application of h-adaptive, high order finite element method to solve radial Schrödinger equation", Molecular Physics, vol. 107, pp. 1339-1348 (2009). -
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LeapFrog Optimizer
Open Source Optimizing Algorithm Written in Python
name: leap frog optimizer version: 0.5 ALPHA author: Mark Redd email: redddogjr@gmail.com written for python version: 2 optimizer algorithm website: http://www.r3eda.com/ about: This optimizer was written based on the algorithm published by Dr. R. Russell Rhinehart. A full explanation of the algorithm can be found at the following URL: http://www.r3eda.com/leapfrogging-optimization-algorithm/ The following are "key references" published on the optimization website explaining the technique: - Rhinehart, R. ... -
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OpenRS
road noise auralization
This software can perform auralizations of a car pass-by. The auralization algorithm is based on Nord2000 and ISO9313. Correction for winds is not implemented. You can export the sounds to a wave-file and save your project. The installer works for for windows. If you want to run the software on a Mac or Linux, you might have to compile the code. -
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PSICOV
The unofficial binary for PSICOV: Protein Sparse Inverse COVariance
PSICOV (Protein Sparse Inverse Covariance estimation program) is a coevoultion algorithm applied to very large (typically >=1000 sequences) multiple sequence alignments for precise protein structural contact prediction. This is the unofficial precompiled Windows binary for PSICOV compiled by Chengxin Zhang at Fudan University. The source code is copyrighted by David T. Jones, University College London. -
CompanyCam is a photo-based solution created for contractors, by contractors.Take unlimited photos—which are location and time-stamped, sent to the cloud, and stored securely. Every photo is organized by project and instantly available to your team, allowing you to see what’s going on anytime, anywhere. Annotate photos with drawings, arrows, comments, tags, and voice notes, and create project timelines, photo galleries, reports, and transformation photos through the app. Sharing photos with customers and insurance adjusters has never been easier, and keeping your entire process organized has never been simpler.
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RNCColorStretch GUI
GUI for RNCColorStretch
Astrophotography Image Processing: Advanced Image Stretching with the rnc-color-stretch Algorithm http://www.clarkvision.com/articles/astrophotography-rnc-color-stretch/ -
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INTEGRATE: Calling gene fusions with exact fusion junctions and genomic breakpoints by combining RNA-Seq and WGS data. To download source code, reference manual and test case, please go to 'Files'. Also refer to 'Wiki' for details.
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cupSODA
Deterministic simulator of mass-action based models
cupSODA is a simulator of biological systems that exploits the remarkable memory bandwidth and computational capability of GPUs. cupSODA allows to efficiently execute in parallel large numbers of simulations, which are usually required to investigate the emergent dynamics of a given biological system under different conditions. cupSODA works by automatically deriving the system of ordinary differential equations from a reaction-based mechanistic model, defined according to the mass-action kinetics, and then exploiting the numerical integration algorithm, LSODA -
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n-chinese-remainders
chinese remainder theorem - progressive solving, n-soln, extras
...crtwo is an improvement to Mathematica's release. crtwo: solves Chinese Remainder a pair at a time, (uses gcd), yet is still fast. Which means crtwo, unlike text book soln, uses an algorithm to solve or fail one mod equation at a time. showing win or fail of each eqn and solving other sawtooth intersections is possible, due to that. crAll2@crtwo provides n soln near x for CR using width of soln crchart3 shows sawtooth CR waves and visible soln align1: solves i m2 == j m2 + b -> {i,j,dist} (like PowerMod->i but b is any and gcd(m1,m2) not req.) ... -
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Density-ratio based clustering
Discovering clusters with varying densities
This site provides the source code of two approaches for density-ratio based clustering, used for discovering clusters with varying densities. One approach is to modify a density-based clustering algorithm to do density-ratio based clustering by using its density estimator to compute density-ratio. The other approach involves rescaling the given dataset only. An existing density-based clustering algorithm, which is applied to the rescaled dataset, can find all clusters with varying densities that would otherwise impossible had the same algorithm been applied to the unscaled dataset. ... -
The CI/CD Platform built for Mobile DevOpsSave time, money, and developer frustration with fast, flexible, and scalable mobile CI/CD that just works. Whether you swear by native or would rather go cross-platform, we have you covered. From Swift to Objective-C, Java to Kotlin, as well as Xamarin, Cordova, Ionic, React Native, and Flutter: Whatever you choose, we will automatically configure your initial workflows and have you building in minutes.
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MUMAL2
Multivariate analysis of MS/MS data using ML techniques
Program described in the paper: MUMAL2: Improving sensitivity in shotgun proteomics using cost sensitive artificial neural networks and a threshold selector algorithm, 2016. By Fabio R. Cerqueira; Adilson M. Ricardo; Alcione P. Oliveira; Armin Graber; Christian Baumgartner. -
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GUI Ant-Miner is a tool for extracting classification rules from data. It is an updated version of a data mining algorithm called Ant-Miner (Ant Colony-based Data Miner).
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An implementation of the Joint Generation Algorithm of Fredman and Khachiyan for the computation of a dual pair of monotone boolean formulas in DNF (hypergraph transversals, extreme rays of polyhedral cones...). User-replaceable oracle.
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pySimiam
Robot simulator inspired by Sim.I.Am
PySimiam is a robot simulator, created to follow the course "Control of Mobile Robots" offered at Coursera. The simulator models an arbitrary number of mobile robots in a 2D environment, each controlled by a arbitrary algorithm. -
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Attitude Estimator
A C++ implementation of a nonlinear 3D IMU fusion algorithm.
Attitude Estimator is a generic platform-independent C++ library that implements an IMU sensor fusion algorithm. Up to 3-axis gyroscope, accelerometer and magnetometer data can be processed into a full 3D quaternion orientation estimate, with the use of a nonlinear Passive Complementary Filter. The library is targeted at robotic applications, but is by no means limited to this. Features of the estimator include gyro bias estimation, transient quick learning, multiple estimation algorithms, tuneable estimator parameters, and near-global stability backed by theoretical analysis. ... -
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smartblob
tiny code, html webcam game or plug brain in each blob, java server
...I'm planning a huge multiplayer world, some blobs played by people holding a bendable loop game controller (tape a 1 meter cut of thick extension cord into a loop) in front of webcam and bend it to bend your blob on screen, and other blobs controlled by AI. This is a game for general AI research in a fun way people can do together. The physics and vision algorithm is half working in version 0.3.0. The gameplay is better experienced in 0.2 which is controlled with the mouse so you dont have enough freedom of movement compared to webcam. This small file contains its own source code including occamserver, a tiny general java server I built which I'll adjust to allow http streaming connections to stay open for faster ajax than a new web call each time. ... -
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Visualization of Protein-Ligand Graphs
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
...The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/ -
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Opt4J
Modular Java framework for meta-heuristic optimization
Opt4J is an open source Java-based framework for evolutionary computation. It contains a set of (multi-objective) optimization algorithms such as evolutionary algorithms (including SPEA2 and NSGA2), differential evolution, particle swarm optimization, and simulated annealing. The benchmarks that are included comprise ZDT, DTLZ, WFG, and the knapsack problem. The goal of Opt4J is to simplify the evolutionary optimization of user-defined problems as well as the implementation of arbitrary... -
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Flamethyst is a flame fractal renderer written in java. It generalizes the classical algorithm in several ways, and support most features of Apophysis .flame files.
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ooPorter
A Porter stemming or stemmer algorithm coded in ooRexx
This is an ooRexx line-by-line port from Ansi-C to ooRexx of the stemming routine published by Martin Porter 1980. The original source code from Porter has been commented out and emulated by the corresponding (oo)Rexx code as far as possible. This is not an example of good or fast (oo)Rexx programming, it is merely a demonstration of the Porter stemming routine ported to ooRexx, use and modify as necessary. Input to the program is a textfile with words to be stemmed, one per line.... -
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MULTOVL
Multiple overlaps of genomic regions
The MULTOVL suite of programs finds multiple overlaps among genomic regions. The MULTOVL algorithm can detect several kinds of region overlaps. In addition to the N-fold overlaps you can detect solitary regions which are the input regions that do not overlap with any other region in the input data set, and union overlaps that is the union of the input regions that overlap at least once somewhere. IMPORTANT NOTICE: MULTOVL has been migrated to BitBucket. -
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erne
ERNE - Extended Randomized Numerical alignEr
We present ERNE (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE comprises ERNE-FILTER (read trimming and continamination filtering), ERNE-MAP (core alignment tool/algorithm), ERNE-BS5 (bisulfite treated reads aligner), and ERNE-PMAP/ERNE-PBS5 (distributed versions of the aligners), -
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MSAProbs: Multiple Sequence Alignment
One of the most accurate multiple protein sequence aligners
MSAProbs is an open-source protein multiple sequence ailgnment algorithm, achieving the stastistically highest alignment accuracy on popular benchmarks: BALIBASE, PREFAB, SABMARK, OXBENCH, compared to ClustalW, MAFFT, MUSCLE, ProbCons and Probalign. -
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Jafaran
Fast and more random implementations of java.util.Random.
...The names of implementations contain "Conc" (for concurrent) if they are thread-safe and non-blocking, or "Seq" (for sequential) if they are not thread-safe. Also provides an implementation of Ziggurat algorithm (based on J. A. Doornik paper, 2005), used by nextGaussian() methods of the provided implementations. Requires Java 5 or later. Also available on github since 2015/12/13: https://github.com/jeffhain/jafaran Principal classes: - Implementations using Mersenne-Twister algorithm (good pseudo-randomness): MTSyncRNG MTSeqRNG - Implementations using Marsaglia Xor-Shift (fast): MXSIntSeqRNG (32 bits) MXSLongSeqRNG (64 bits) (nextLong() faster, larger period) - Ziggurat: Random-based implementation of Ziggurat algorithm. -
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ChEnMTD
Calculate the number of theoretical trays with McCabe-Thiele method
Use the McCabe-Thiele method to calculate the number of theoretical trays in a distillation column operated under the conditions specified. It has tools for data analysis to obtain empirical or semi-empirical equilibrium models. You can even use cubic splines. This project uses icons of "Open Icon Library" https://sourceforge.net/projects/openiconlibrary/ -
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iCAS - An Illumina Clone Assembly System
An Illumina clone assembly system using SOAPdenovo and ABySS
...However, assemblies obtained using current whole genome assemblers are often fragmented and sometimes have issues of genome completeness owing to different data characteristics introduced by multiplexed sequencing. With iCAS the data filtering process is based on a novel kmer frequency algorithm, resulting in near perfect pre-assembly reads. Contigs are generated using different assembly algorithms and then merged together to achieve longer continuity. Re-aligning all the reads back to the draft contigs and recalibrating each sequence base achieves a final consensus. Using finished clones for QC, the pipeline is able to obtain assemblies with clone coverage of 99.7% and consensus base quality of Q39. ...
