Search Results for "assembly source code" - Page 31
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Showing 1340 open source projects for "assembly source code"
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The Blast2SNP is able to pick out synonymous, non-synonymous mutations and indels from draft assembly sequences by performing BLAST search against the reference ORF sequences.
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ShiVaSmiles
A slick interface to see various scale analysis algorithms in action.
The Shape Visualizer is intented to be an exploratory/educational tool making it quick and easy to see how various mathematical methods perform in analysing and selecting the various patterns present on an image. The main website is built as a wiki gathering info and examples on the various implemented algorithms. The combination of the application and its wiki intend to constitute a nice little pedagogic toolkit for multiscale analysis. Feel free to contribute code or wiki content ! -
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TiffToDicom
A converter from Tiffs to Dicoms
This is not a final version but a work in progress. I am releasing the code only in the hopes that it will be helpful. There will be further updates in the future as the project is being actively developed. -
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PetriNetExec: Java Embeddable Petri Nets
PetriNetExec a library for embedding Petri Nets into Java applications
...That is not really a feature :-) but to those of you able to cope with this news I suggest to read further; * Petri Nets are created with PetriNetExec by writing Java code and using the provided API; * PetriNetExec provides a simple yet powerful callback mechanism allowing you to actually do something when events are fired and the network status is changing. * PetriNetExec is embeddable into your Java application. This means that you can build your own application and add Petri Nets into it. * PetriNetExec is open-source. -
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MIDA
Mitochondiral Infectious Damage Adaptation (MIDA) model of aging
...Please, send email to thilo.figge<at>hki-jena.de to request a copy of the source code. -
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OmniHelp is a cross-platform, browser-independent, tri-pane help viewer built in pure JavaScript and CSS with HTML 4. Some functions (such as help embedding) may in the future be in Java, C, or C++; CSH is fully supported. All code is under the LGPL.
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LIME
LIME is a software tool for creating multiphysics simulation codes.
...LIME is intended to be especially useful when separate computer codes (which may be written in any standard computer language) already exist to solve di fferent parts of a multiphysics problem. LIME provides the key high-level software (written in C++), a well defi ned approach (with example templates), and interface requirements to enable the assembly of multiple physics codes into a single coupled-physics simulation code. To achieve its flexible lightweight design objectives, LIME 1.0 requires that some amount of customized software be written each time a new multiphysics application is created. Also, modest high-level revisions or modifications to most stand-alone physics codes may be required to meet interface requirements. ... -
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This is a collection of tools and a code library to assist engineers who are developing SystemVerilog based verification environments. Components include utility libraries, scoreboard and shutdown manager implementation, register tool, etc.
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libSVMWrapper
.NET wrapper for libsvm.dll on LGPL
libSVMWrapper a wrapper for libsvm.dll What is it? libSVMWrapper is a .NET wrapper for libsvm.dll and is provided to you under LGPL license version 3. This library should work with 32bit version of libsvm.dll. Documentation for libsvm.dll Chih-Chung Chang and Chih-Jen Lin, LIBSVM : a library for support vector machines, 2001. Software available at http://www.csie.ntu.edu.tw/~cjlin/libsvm -
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SmithWaterman
Fast local sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align An implementation of the Smith-Waterman local sequence alignment algorithm. See our sister project global alignment using Needleman-Wunsch: http://sourceforge.net/projects/needlemanwunsch/ -
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Infinity.NET
Port of the GNU Scientific Library Special Functions module to .NET
This is the source code port of the Special Functions module from the GNU Scientific Library (GSL) to the .NET environment. The library includes implementation of the Airy functions, Bessel functions, Gamma related functions, etc. -
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The RODEOlib, or (Ro)bust (De)sign (O)ptimization library, is a MATLAB/Octave library for (robust) optimization using Evolutionary Algorithms. It contains MATLAB/Octave code for optimization in noisy and uncertain environments.
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numerica
Basic numerical algorithms in c++
IMPORTANT: This project have been migrated to GitHub (https://github.com/krvajalmiguelangel/libnumerica) To use this or leave feedback, please visit github site instead. numerica implements some of the basic numerical algorithms about root-finding, interpolation, system of linear equations, integration, and ordinary differential equations. The aim is to be simple, code-readable and generic. New features of the recently approved c++11 are used. -
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Powersim
Energy Estimation in SystemC.
...Powersim is a SystemC class library aimed to the calculation of power and energy consumption of hardware described at system level. To this end C++ operators are monitored and different energy models can be used for each data type. Powersim does not require any change in the application source code. Current version is 0.3.0. -
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mlpy
Machine Learning Python
mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and of GSL. mlpy provides high-level functions and classes allowing, with few lines of code, the design of rich workflows for classification, regression, clustering and feature selection. mlpy is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License version 3. mlpy is available both for Python >=2.6 and Python 3.X. -
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aal
The Advanced Algebraic Language.
The Advanced Algebraic Language (AAL) is a very dynamic programming language designed to fill the void that has appeared between mainstream languages and algebra. As a result its main focus is ease of use for math problems. To download AAL check out the source code repository. There are versions available for windows and linux with both 32 and 64 bit native binaries: http://svn.code.sf.net/p/aal-lang/code/trunk/bin/ -
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JFinisher
JFinisher is software for alignment, editing and manipulation DNA seqs
JFinisher is software for alignment, editing and manipulation of biological sequences. It aims to assist in the finishing of genome assembly. Starting from a reference sequence, the program align contigs using Smith-Waterman local alignment algoritm with auxiliary methods, allowing management of the alignments generated. It has graphical interface for manipulation and visualization of the actions, uniting features that help in editing the sequences. It has internal projects manageable and... -
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LCD_TUI_Toolkit
LCD TextUserInterface Toolkit with edit widgets on alphanumeric LCD
For alphanumeric LCD (character), nice, easy and lightweight toolkit (in plain C) to have many widgets: button, checkbox, edit of numbers (free or bounded), edit of string, cycle. Virtual page possibility. To ease creations of many menus with always same appearance. Simple example menus demo provided. Low-level LCD part included is for classic hardware HD44780 through the parallel port (based on code by Randy Rasa, see at http://ee.cleversoul.com/lcd-project.html) -
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PORUS is a portable USB stack for peripheral devices. Enumeration is handled automatically by C code generated from an easy-to-use configuration file. PORUS is written in standard C, so porting to new hardware is straightforward.
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The algorithms package is aimed at (flexibly) typesetting pseudo-code in LaTeX documents (with the high typographical quality provided by the TeX engine).
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Composer for OWL-S-based Semantic Web Services that can load SWRL-based Semantic Bridges to mediate between heterogeneous ontology concepts. Exports semantic. enh. BPEL code. Dependency to BerliOS-project: "sembpelext". Also see QualiPSo.org for details.
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The C/C++ Program Perfometer is an open source tool which enables the programmer to measure the comparative performance of a C/C++ program or of separated pieces of code by one of several desired metrics: e.g., time, memory, or metrics defined by the prog
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KinectCAD
Gesture based movement with CATIA
...Further there is a rudimentary speech recognition to change the rotating axes or to do some other helpful things. KinectCAD has been written in Visual C# 2010. The package includes the source code and binaries files. To start KinectCAD it is necessary to have a correct installed Microsoft Kinect. Also it is helpful if there is an installed Kinect SDK V1. But you can also download the Runtime at: http://download.microsoft.com/download/E/E/2/EE2D29A1-2D5C-463C-B7F1-40E4170F5E2C/KinectRuntime-v1.0-Setup.exe Important! ... -
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Open Metaheuristic (oMetah) is a library aimed at the conception and the rigourous testing of metaheuristics (i.e. genetic algorithms, simulated annealing, ...). The code design is separated in components : algorithms, problems and a test report generator
