Showing 271 open source projects for "drcom-for-linux"

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  • 1

    cnvOffSeq

    detecting & genotyping intergenic CNVs using off-target exome data

    cnvOffSeq is a set of Java-based command-line tools for detecting and genotyping intergenic copy number variation (CNV) using off-target data from whole-exome sequencing experiments.
    Downloads: 1 This Week
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  • 2
    Full featured free PACS based on dcm4chee and mysql, with remote web accession available for Linux in Debian packaging format for x86 32 and 64 bit processors. (KEYWORDS: PACS,DICOM,HL7,WORK LIST)
    Downloads: 2 This Week
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  • 3
    Global Land Use and technological Evolution Simulator.
    Downloads: 0 This Week
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  • 4
    Downloads: 0 This Week
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  • 5
    QUASI is a toolkit to rapidly assess the quality of shRNA-Seq based data and call differential abundance using common statistical inference methods (DESeq, edgeR, baySeq).
    Downloads: 0 This Week
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  • 6

    Aelius Brazilian Portuguese POS-Tagger

    Python, NLTK-based package for shallow parsing of Brazilian Portuguese

    Aelius is an ongoing open source project aiming at developing a suite of Python, NLTK-based modules and interfaces to external freely available tools for shallow parsing of Brazilian Portuguese. It also includes language resources such as language models, sample texts, and gold standards. Presently, Aelius already offers facilities for POS-tagging and chunking corpora and outputting annotations in different formats, such as in XML in the TEI P5 encoding scheme.
    Downloads: 0 This Week
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  • 7

    ExonFinder

    A pipeline to extract novel cassette exons/retained-introns

    ExonFinder provides a pipeline to extract novel cassette exons and novel retained-introns from the results of mapping cross-species ESTs against a target genome via blat.
    Downloads: 0 This Week
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  • 8

    PolySim

    Polymer simulation utilites

    ...Input and output are based on PDB file format which is better to visualize with pymol. For specific non-pdb input/output of 2nd program there are convertation utils also available. Programs are expected to compile in gcc under cygwin or pure linux environment. Scripts to run many copies of program under pbs/torque cluster system are also available.
    Downloads: 0 This Week
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  • 9

    STANTOR

    Scada for Home Automation

    Stantor is a SCADA for home automation/domotic project. It drives : k8061-K8055(USB), K8000(I2C), Arduino Mega and Uno, X10, 1-Wire, electricity meters, Webcam (motion), infrared remote controls. It uses WEB browser, smartphone, xHTML, SOAP, Websocket, HTML5 Apache, mySQL, PHP, javascript and Ajax. Stantor allows control of electrical equipments like boilers, shutters, lamps, pumps, etc...connected to the 220V/110 VAC. Gathering information of various kinds such as temperature, light,...
    Downloads: 0 This Week
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  • 10

    GEMPlot

    GUI Program for GEMPAK

    GUI Program for plotting Model & ReAnalysis Data using GEMPAK. Users can perform Model Analysis, Surface Analysis, Objective Analysis, Cross-Sectional Analysis, Isentropic Analysis, and ReAnalysis. Soundings can also be plotted for a selection of upper air stations within the CONUS.
    Downloads: 0 This Week
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  • 11

    Model Transformation Tools

    Bond-graph based modelling tools

    A set of tools for modelling dynamic physical systems using the bond-graph methodology and transforming these models into representations suitable for analysis, control and simulation. These tools use, and generate m files for, GNU Octave.
    Downloads: 0 This Week
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  • 12

    DRAMMS

    A Deformable Medical Image Registration Toolbox

    DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse...
    Downloads: 0 This Week
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  • 13

    OSGC - OpenSource Geospatial Catalogue

    OpenSearch GeoSpatial Catalogue

    OSGC is an Open Source implementation of an OpenSearch GeoSpatial Catalogue compliant to OGC 10-32r3 specification, developed by EGI.eu (http://www.egi.eu/) under the ENVRI (http://envri.eu/) project. OSGC provides a catalogue engine built on top of a PostgreSQL+Postgis database, which exposes a cusmizable OpenSearch interface. Most of the application configuration can be set from the Admin web interface, while Data Administrators have a separated Dropbox interface, which ease the...
    Downloads: 6 This Week
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  • 14
    Travel Market Simulator
    That project aims at studying and comparing typical airline IT methods, for instance RM-related algorithms. It works from a Unix/Linux/Mac command-line, and exposes basic APIs. It is being developed in C++, with Python wrappers for some components.
    Downloads: 0 This Week
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  • 15
    wEMBOSS is a Web interface for the EMBOSS software package for biological sequence analysis. Under wEMBOSS each user has a private workspace (UNIX home directory) on the server, where he can permanently store his data and organize them in projects. The companion suite wrappers4EMBOSS allows to integrate under EMBOSS a number of popular bioinformatic software suites as BLAST, CLUSTAL and MRS.
    Downloads: 0 This Week
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  • 16

    manticora

    ternary logic calculator

    Some scripts for boolean calculation, including a parser. Ternary logic support. Everything is written in Posix Sh.
    Downloads: 0 This Week
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  • 17
    CoDeCZ

    CoDeCZ

    Derive copy number status from targeted sequencing data

    CoDeCZ derives copy number state from targeted sequencing data on gene or exon level. Results are NOT true copy number however, but they are semi-quantitative: It uses the modified z-score to calculate deviation in normalized coverage per specified region. The higher the Z-score, the higher the copy number. The final z-score depends on the quality of the data and the makeup of the reference pool.
    Downloads: 0 This Week
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  • 18

    NIKS

    NIKS (Needle in a K-stack) - detection of mutations in NGS data

    To get access to the code, please check it out with svn as described in the code section.
    Downloads: 0 This Week
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  • 19
    SubString is a set of shell scripts implementing substring reduction and frequency consolidation of word n-grams.
    Downloads: 0 This Week
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  • 20
    Bioinformatic tools for analyzing an orfeome using translated ORFs and compares each ORF to the provided Orfeome/Proteome. Our script uses NCBI BLAST run locally and MySQL as the main engines in a new and interisting way. It is designed specifically for Poxvirus genomes, and provides the VACV-COP nomenclature and Cowpox Ortholog groups per each ORF. The BLAST stats are generated when compared to the Proteome you provide. It can be easily adapted for other genomes.
    Downloads: 1 This Week
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  • 21

    OrthoRBH

    Rapidly identify orthologous cDNA sequences in related species

    OrthoRBH is a tool/pipeline designed to identify families of protein coding transcripts/genes in related species using a reciprocal blast method. It can search through databases of full-length cDNAs, ESTs or mRNA-seq data. Optional assembly of candidate sequences allows assembly of contigs. It is suited to handling a mixture of EST and mRNA-seq sequence data. It performs batch blast searches, so it is ideal for large multi-gene families. After collecting candidate sequences, it performs...
    Downloads: 0 This Week
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  • 22
    DOMjudge programming contest jury system

    DOMjudge programming contest jury system

    DOMjudge is an automated judge system for programming contests.

    NOTE: DOMjudge has moved to www.domjudge.org and Github for all development. DOMjudge is an automated judge system to run programming contests. Both team and jury side interfaces are web based, with a command line submit tool available as well. It is written in PHP, shell-script and C/C++ and needs MySQL and a webserver.
    Downloads: 0 This Week
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  • 23
    IMEP-Spice interface
    The developed graphical interface is based on the SKILL language which is a Lisp dialect used as a scripting language and PCell (Parameterized Cells) description language used in many EDA software suites by Cadence Design Systems.
    Downloads: 1 This Week
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  • 24

    pdf2mp3

    Simply convert your PDF files into audio books

    Summary: Your eyes are tired of looking into the tablet or cell-phone screen reading ebooks? You have difficulty reading from LCD screen specially in a driving vehicle? This software is for you! It converts your PDF files to MP3 audio books. Special Features (Compared to similar projects): Each page is in a separate MP3 file. Created MP3 files have ID3v2 tags showing Book name and page number. Multi-threaded conversion, means all CPU cores will be used thus multiple times faster conversion.
    Downloads: 2 This Week
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  • 25
    parastructure is a perl script collection to run the population genetics software STRUCTURE from Pritchard et al. 2000 (http://pritch.bsd.uchicago.edu/structure.html) in parallel on a cluster (beowulf type). Each run of K (the number of populations) is executed separately on each CPU of the cluster trough queue system based on PBS. A summary statistics table and distruct figures (Noah Rosenberg: http://www.stanford.edu/group/rosenberglab/distruct.html) are built at the end of the run. A...
    Downloads: 0 This Week
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