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A file format for exchanging computational models in systems biology
The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented.
Project files contain:
- simple code to hold/read/write data and perform sample processing.
- BioC-formatted corpora
- BioC tools that work with BioC corpora
BioC goals
- simplicity
- interoperability
- broad use
- reuse
There should be little investment required to learn to use a format or a software module to process that format. We are...
TIDAL is a collection of data acquisition and processing tools for
research in respiratory physiology. It provides a high-level language for specifying experimental protocols and required computations.
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ruby-gsl is a port of the GNU Scientific Library (GSL) to the Ruby programming language. The GNU Scientific Library is a collection of routines for numerical computing. Ruby is an interpreted scripting language for quick and easy object-oriented programm
A hybrid system simulation language similar to SHIFT and Lambda-SHIFT, written in Ruby and C. Combines numerical integration, state machines, and the breezy power of Ruby. To install: get ruby and then "gem install redshift".