Search Results for "model-builder"
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Showing 161 open source projects for "model-builder"
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AlphaGenome
Programmatic access to the AlphaGenome model
The model analyzes DNA sequences of up to 1 million base pairs in length and can deliver predictions at single-base-pair resolution for most outputs. AlphaGenome achieves state-of-the-art performance across a range of genomic prediction benchmarks, including numerous diverse variant effect prediction tasks. -
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Surya
Implementation of the Surya Foundation Model for Heliophysics
...Foresees solar flares, wind, EUV spectra, and active region formation in advance. Achieves approximately 16% improvement in forecasting accuracy over traditional methods. 366-million‑parameter foundation model capturing general-purpose solar representations. -
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Open X-Embodiment
Unified open dataset enabling cross-embodiment learning for robotics
...Its primary goal is to make all available open-source robotic data interoperable by representing them using the RLDS (Reinforcement Learning Dataset Structure) episode format. This enables seamless integration for training, evaluation, and model development across diverse robotic tasks and embodiments. The dataset aggregates contributions from multiple open-source robotic projects, all harmonized under a single unified data schema. The repository also provides Colab notebooks for dataset visualization, batching, and model inference, along with pretrained model checkpoints such as RT-1-X, a multitask robotic transformer model trained on this data. -
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Evo 2
Genome modeling and design across all domains of life
...The codebase is focused on local inference and generation through the Vortex inference stack rather than serving as a full training framework alone, although it also points users to training and fine-tuning resources. It supports multiple ways of working with the model, including forward passes, embeddings, generation workflows, notebooks, hosted APIs, and self-hosted deployment through NVIDIA NIM. -
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alphageometry
AI-driven neuro-symbolic solver for high-school geometry problems
...The repository provides the full implementation of DDAR (Deductive Difference and Abductive Reasoning) and AlphaGeometry, two automated geometry solvers described in the 2024 Nature paper “Solving Olympiad Geometry without Human Demonstrations.” AlphaGeometry integrates a symbolic deduction engine with a transformer-based language model to propose and validate geometric constructions in a stepwise proof process. The DDAR solver focuses purely on rule-based reasoning, while AlphaGeometry enhances this by using a learned model to suggest auxiliary constructions when logical reasoning alone is insufficient. The repository includes pre-trained weights, vocabulary files, and detailed configuration options for reproducing experiments. -
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NVIDIA Isaac GR00T
NVIDIA Isaac GR00T N1.5 is the world's first open foundation model
...The vision-language model remains frozen during both pretraining and finetuning, preserving language understanding and improving generalization. Streamlined MLP connection between vision encoder and LLM with added layer normalization. -
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pyVideoTrans
Translate the video from one language to another and embed dubbing
pyVideoTrans is an ambitious open-source multimedia processing project that assembles speech recognition, subtitle generation, AI translation, voice synthesis, and video assembly into a unified pipeline for converting videos from one language to another with embedded dubbing and captions. At its core it runs speech-to-text models to transcribe audio tracks, translates the resulting text into a target language using local or cloud-based translation engines, synthesizes new speech to match the... -
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FairChem
FAIR Chemistry's library of machine learning methods for chemistry
...The centerpiece models (e.g., UMA variants) plug directly into the ASE ecosystem via a FAIRChem calculator, so users can run relaxations, molecular dynamics, spin-state energetics, and surface catalysis workflows with the same pretrained network by switching a task flag. Tasks span heterogeneous domains—catalysis (OC20-style), inorganic materials (OMat), molecules (OMol), MOFs (ODAC), and molecular crystals (OMC)—allowing one model family to serve many simulations. The README provides quick paths for pulling models (e.g., via Hugging Face access), then running energy/force predictions on GPU or CPU. -
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bilingual_book_maker
Make bilingual epub books Using AI translate
bilingual_book_maker is an AI-assisted translation tool for creating bilingual and multilingual versions of books and text files. It is designed to process formats such as EPUB, TXT, SRT, and PDF, then generate translated output that helps readers compare the original text with the target language. The project supports multiple AI providers and models, including OpenAI-compatible models and other translation backends through LiteLLM-style integrations. It is especially useful for public... -
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BioNeMo
BioNeMo Framework: For building and adapting AI models
BioNeMo is an AI-powered framework developed by NVIDIA for protein and molecular generation using deep learning models. It provides researchers and developers with tools to design, analyze, and optimize biological molecules, aiding in drug discovery and synthetic biology applications. -
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The Missing Semester
The Missing Semester of Your CS Education
The Missing Semester is a course and repository that teaches the engineering skills often skipped in traditional computer science curricula: command-line fluency, shell scripting, editors, version control, debugging, data wrangling, and automation. It includes lecture notes, exercises, and sample solutions that encourage hands-on practice rather than passive reading. The curriculum demystifies tools like bash, vim, git, and make, showing how to combine them into efficient workflows that... -
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Segments.ai
Segments.ai Python SDK
Multi-sensor labeling platform for robotics and autonomous vehicles. The platform for fast and accurate multi-sensor data annotation. Label in-house or with an external workforce. Intuitive labeling interfaces for images, videos, and 3D point clouds (lidar and RGBD). Obtain segmentation labels, vector labels, and more. Our labeling interfaces are set up to label fast and precise. Powerful ML assistance lets you label faster and reduce costs. Integrate data labeling into your existing ML... -
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Grafana
Leading open-source visualization and observability platform
Grafana OSS is the leading open-source platform for visualization and observability. It enables teams to query, visualize, alert on, and explore telemetry data from multiple sources in a single interface. With support for 100+ data source plugins—including Prometheus, Loki, Elasticsearch, InfluxDB, SQL/NoSQL databases, and OpenTelemetry—Grafana helps teams correlate metrics, logs, and traces across applications and infrastructure. Users can build interactive dashboards with rich... -
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Protenix
A trainable PyTorch reproduction of AlphaFold 3
Protenix is an open-source, trainable PyTorch reimplementation of AlphaFold 3, developed by ByteDance with the goal of democratizing high-accuracy protein structure prediction for computational biology and drug-discovery research. Protenix provides a complete pipeline for turning protein sequences (with optional MSA / sequence alignment) or structural inputs (e.g. PDB/CIF) into full 3D atomic-level structure predictions. It supports both “full” models and lightweight variants such as... -
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BioEmu
Inference code for scalable emulation of protein equilibrium ensembles
Biomolecular Emulator (BioEmu for short) is a model that samples from the approximated equilibrium distribution of structures for a protein monomer, given its amino acid sequence. By default, unphysical structures (steric clashes or chain discontinuities) will be filtered out, so you will typically get fewer samples in the output than requested. The difference can be very large if your protein has large disordered regions, which are very likely to produce clashes. -
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statsmodels
Statsmodels, statistical modeling and econometrics in Python
...Generalized linear models with support for all of the one-parameter exponential family distributions. Markov switching models (MSAR), also known as Hidden Markov Models (HMM). Vector autoregressive models, VAR and structural VAR. Vector error correction model, VECM. Robust linear models with support for several M-estimators. statsmodels supports specifying models using R-style formulas and pandas DataFrames. -
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FreeCAD
a parametric 3D CAD modeler
...It is 100% Open Source and extremely modular, allowing for very advanced extension and customization. FreeCAD is based on OpenCasCade, a powerful geometry kernel, features an Open Inventor-compliant 3D scene representation model provided by the Coin 3D library, and a broad Python API. The interface is built with Qt. FreeCAD runs exactly the same way on Windows, Mac OSX and Linux platforms. -
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...Over 50 auditory models implemented in Matlab, Octave, C, C++, and Python can be run from Matlab and Octave, on Windows and Linux. The AMT provides a well-structured in-code documentation, includes auditory data required to run the models. It integrates functionality to reproduce the model predictions. Model implementations can be evaluated in two stages, by running so-called demonstrations which are quick presentations of a model and by starting so-called experiments aimed at reproducing results from the corresponding publications. Easy installation and user-friendly access help students and researchers to work with and to advance existing models.
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Avogadro
An intuitive molecular editor and visualization tool
Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers a flexible rendering framework and a powerful plugin architecture. -
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ANUGA is a software implementation of a hydrodynamic model which is specifically designed to model wetting and drying processes. ANUGA is a joint development project between Geoscience Australia (GA) and the Australian National University (ANU). ANUGA is now being developed on github at https://github.com/anuga-community/anuga_core For information on ANUGA please go to http://anuga.anu.edu.au The ANUGA project is described on http://en.wikipedia.org/wiki/ANUGA_Hydro
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PROPER Optical Propagation Library
Routines for wavefront propagation in IDL, Matlab, and Python
...It is currently available for IDL (Interactive Data Language), Matlab and Python (3.x). It includes routines for generating complex apertures and obscurations and aberrations (Zernike & PSD-defined). It includes a model of a deformable mirror for wavefront control. The routines perform near and far field propagation with automatic selection of propagators. The latest version is v3.3.6 (IDL, Matlab) and v3.3.7 (Python). -
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relax
Molecular dynamics by NMR data analysis
...It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE, reduced spectral density mapping, the Lipari and Szabo model-free analysis, study of domain motions via the N-state model and frame order dynamics theories using anisotropic NMR parameters such as RDCs and PCSs, the investigation of stereochemistry in dynamic ensembles, and the analysis of relaxation dispersion data. -
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PoseidonQ - AI/ML Based QSAR Modeling
ML based QSAR Modelling And Translation of Model to Deployable WebApps
- This Software was made with an intention to make QSAR/QSPR development more efficient and reproducible. - Published in ACS, Journal of Chemical Information and Modeling . Link : https://pubs.acs.org/doi/10.1021/acs.jcim.4c02372 - Simple to use and no compromise on essential features necessary to make reliable QSAR models. - From Generating Reliable ML Based QSAR Models to Developing Your Own QSAR WebApp. For any feedback or queries, contact kabeermuzammil614@gmail.com - Available on... -
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GenX
X-Ray and Neutron Reflectivity Modeling
GenX is a scientific program to refine x-ray refelcetivity, neutron reflectivity and surface x-ray diffraction data using the differential evolution algorithm. GenX is very modular and highly extensible and can be used as a general fitting program. -
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SMILI
Scientific Visualisation Made Easy
The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with...
