Showing 25 open source projects for "memory"

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  • 1
    Protenix

    Protenix

    A trainable PyTorch reproduction of AlphaFold 3

    Protenix is an open-source, trainable PyTorch reimplementation of AlphaFold 3, developed by ByteDance with the goal of democratizing high-accuracy protein structure prediction for computational biology and drug-discovery research. Protenix provides a complete pipeline for turning protein sequences (with optional MSA / sequence alignment) or structural inputs (e.g. PDB/CIF) into full 3D atomic-level structure predictions. It supports both “full” models and lightweight variants such as...
    Downloads: 5 This Week
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  • 2
    FFTW++ is a C++ header class for the FFTW Fast Fourier Transform library that automates memory allocation, alignment, planning, wisdom, and communication on both serial and parallel (OpenMP/MPI) architectures. In 2D and 3D, hybrid dealiasing of convolutions substantially reduces memory usage and computation time. Wrappers for C, Python, and Fortran are included.
    Downloads: 2 This Week
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  • 3
    asammdf

    asammdf

    Fast Python reader and editor for ASAM MDF / MF4 (Measurement Format)

    *asammdf* is a fast Python parser and editor for ASAM (Associtation for Standardisation of Automation and Measuring Systems) MDF / MF4 (Measurement Data Format) files. It supports MDF versions 2 (.dat), 3 (.mdf) and 4 (.mf4). *asammdf* works on Python 2.7, and Python >= 3.4
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    Downloads: 40 This Week
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  • 4
    ...Uses surface Method of Moments, enhanced by using the Multilevel Fast Multipole Method. Code is parallelized and runs on laptops, desktops and clusters. The code precision is adjustable, it is fast and uses little memory. CFIE is used for closed surfaces, and EFIE for open PEC surfaces. Can function on GMSH, GiD and ANSYS meshes.
    Downloads: 1 This Week
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  • 5
    Baya - SoC Integration Platform

    Baya - SoC Integration Platform

    Best in class SoC Integration Platform, IP-XACT, Verilog VHDL, UPF

    ...Hierarchy Manipulation to create Power Domain, Voltage Domain, comply with Floor planning 8.a. Insert new hierarchy 8.b. Remove existing hierarchy 9. Associate the IP-XACT memory maps with the SoC component instances 10. Dump out the C Model for the entire design 11. Glue-Logic insertion 12. Spare port insertion across hierarchies 13. Automatic creation of the top module and it's ports based upon specified rule 14. Creates stub module
    Downloads: 2 This Week
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  • 6
    IP-XACT 2009/2014  Platform

    IP-XACT 2009/2014 Platform

    Smart GUI/Commandline tools to create IP-XACT( 2009/2014) files

    ...One can create IP-XACT Component, Design or Registers by importing Ip in System Verilog/Verilog-95/VHDL, instantiate Bus Interfaces with proper port maps and attributes as needed. Smart GUI to create IP-XACT Registers, Memory Maps, Address Blocks for IP- has feature to import XLS or Verilog . It has Tcl/Python API support. ipxact2verilog - Generate Verilog module from IP-XACT definition ipxact2vhdlentity - Generate VHDL entity from IP-XACT Component definition verilog2ipxact - Generates IP-XACT definition from Verilog modules vhdl2ipxact - Generates IP-XACT definition from VHDL source ipxactcoherencycheckerverilog / ipxactcoherencycheckervhdl - Validates IP-XACT Component definition with RTL validateipxact - IP-XACT Linting tool
    Downloads: 0 This Week
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  • 7
    NuPIC

    NuPIC

    Numenta platform for intelligent computing

    The Numenta Platform for Intelligent Computing (NuPIC) is a machine intelligence platform that implements the HTM learning algorithms. HTM is a detailed computational theory of the neocortex. At the core of HTM are time-based continuous learning algorithms that store and recall spatial and temporal patterns. NuPIC is suited to a variety of problems, particularly anomaly detection and prediction of streaming data sources. For more information, see numenta.org or the NuPIC Forum. If you want...
    Downloads: 0 This Week
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  • 8

    miRPV

    miRPV: An automated pipeline for miRNA Prediction and Validation in si

    miRPV is an Automated tool that allows users to predict and validate microRNA from genome/gene sequence. System Requirement CPU: AMD64 (64bit) Memory: 2Gb RAM Storage: 5Gb Ubuntu 18.04
    Downloads: 1 This Week
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  • 9
    aseryla

    aseryla

    Aseryla code repositories

    This project describes a model of how the semantic human memory represents the information relevant to the objects of the world in text format. It provides a system and a GUI application capable of extracting and managing concepts and relations from English texts. https://aseryla2.sourceforge.io/
    Downloads: 0 This Week
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  • 10
    Pootle Django

    Pootle Django

    Online translation tool

    ...Key localization file formats are supported, including Gettext PO, XLIFF, Java .properties, PHP arrays and many more supported by the Translate Toolkit. Ensures the best quality localizations by automatically detecting common errors made by translators. Integrates user suggestions, terminology, Translation Memory, Machine Translation, and more. A number of translation projects for a number of languages can be hosted on Pootle. Teams can manage their files, permissions, projects, and translate on-line. Files can be downloaded for offline translation. Delegate to your translators and allow them to commit directly to your version control systems. ...
    Downloads: 0 This Week
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  • 11

    P3BSseq

    Parallel processing pipeline for analysis of bisulfite sequencing data

    Bisulfite sequencing (BSseq) processing is among the most cumbersome next generation sequencing (NGS) applications. Though some BSseq processing tools are available, they are scattered, require puzzling parameters and are running-time and memory-usage demanding. We have developed P3BSseq, a parallel processing pipeline for fast, accurate and automatic analysis of BSseq reads that trims, aligns, annotates, records the intermediate results, performs bisulfite conversion quality assessment, generates BED methylome and report files following the NIH standards. P3BSseq outperforms the known BSseq mappers regarding running time, computer hardware requirements. ...
    Downloads: 0 This Week
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  • 12

    GMES

    GMES is a free Python package for FDTD electromagnetic simulations.

    GMES is a free finite-difference time-domain (FDTD) simulation Python package developed at GIST to model photonic devices. Its features include simulation in 1D, 2D, and 3D Cartesian coordinates, distributed memory parallelism on any system supporting the MPI standard, portable to any Unix-like system, variuos dispersive ε(ω) models, CPML absorbing boundaries and/or Bloch-periodic boundary conditions, and arbitrary material and source distributions. GMES officially stands for GIST Maxwell’s Equations Solver.
    Downloads: 0 This Week
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  • 13
    Yet Another Audio Feature Extractor is a toolbox for audio analysis. Easy to use and efficient at extracting a large number of audio features simultaneously. WAV and MP3 files supported, or embedding in C++, Python or Matlab applications.
    Downloads: 0 This Week
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  • 14

    SAT-Assembler

    Scalable and accurate targeted gene assembly for large-scale NGS data

    SAT-Assembler is a scalable and accurate gene assembly tool for large-scale RNA-Seq and metagenomic data. It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms.
    Downloads: 0 This Week
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  • 15
    Brain Workshop

    Brain Workshop

    Python implementation of the Dual N-Back mental exercise

    Brain Workshop is a Python implementation of the Dual N-Back mental exercise. This exercise is the only mental activity that has been scientifically shown to improve your short-term memory (working memory) and fluid intelligence.
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    Downloads: 433 This Week
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  • 16

    N.Tesla

    Numerical Transient Simulator for Power System

    ...N.Tesla is an open source project to provide students and researchers of EE with a tool to implement new models for power system study and research. N.Tesla is short for Numerical TransiEnt SimuLAtor for power system and is in memory of Nikola Tesla, one the greatest scientists in alternating current power system. If you have any questions, please contact the author by send email to [lichgang AT gmail DOT com] or leave feedback in the Discussion forum. Mailing List for N.Tesla: http://www.freelists.org/list/ntesla Mailing List for N.Tesla Developer: http://www.freelists.org/list/ntesla-dev
    Downloads: 0 This Week
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  • 17
    ParaSim

    ParaSim

    Parallelized calculation of molecular similarities

    ...It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently queried datasets as persistant objects in memory for short response times. ParaSim calculates chemical similarities based on binary structural fingerprints. It does not compute fingerprints by itself but relies on third party software to do so. Basically, all types of structural fingerprints which can be stored in an array of bits (a bitset) can be used by ParaSim. See the Wiki (https://sourceforge.net/p/parasim/wiki/Documentation/) for detailed documentation. ...
    Downloads: 0 This Week
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  • 18

    ppc_sim_booke

    e500v2 simulator

    An experimental ISS for freescale's e500v2 core. It is meant to simulate only cpu and memory subsystem and is purely intended for academic/learning purposes only.
    Downloads: 0 This Week
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  • 19

    QUASR

    Cross-platform NGS processing and analysis pipeline in Python

    ...Functions include: duplicate removal demultiplexing primer-removal quality-assurance (QA) graphing quality control (QC) consensus-generation minority-variant determination minority-variant graphing The main current version is 6.X, which is written in Python3. 7.X is my rewrite in Java, but is still work in progress. Both are written to be as lightweight as possible so they can run with minimal memory-requirements on a desktop or laptop as well as on a compute cluster. If you have any problems with QUASR, please do contact me at the email address provided in the README.
    Downloads: 0 This Week
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  • 20
    HeWIT helps you create and fill out forms. It tells you if you've missed anything or made any mistakes. You can then send the form over email, upload to a web site, or pass it by memory stick to whoever needs it next.
    Downloads: 0 This Week
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  • 21
    gsdview
    Geo-Spatial Data Viewer (GSDView) is a lightweight viewer for geo-spatial data and products. It is written in python and Qt4 and uses the GDAL library. GSDView is modular and has a simple plug-in architecture.
    Downloads: 0 This Week
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  • 22
    WARNING! HPGL source code (NOT the releases, they are still here) now moved to the GitHub at https://github.com/hpgl/hpgl. Please, update your bookmarks!
    Downloads: 1 This Week
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  • 23
    QuickFlash is a C++-based analysis library for data files generated by the Flash hydrodynamics code. It provides high-performance access to large datasets in low memory situations and other restrictive environments.
    Downloads: 0 This Week
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  • 24
    Simple text-based python program for developing auditory working memory (Digit Span)
    Downloads: 1 This Week
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  • 25
    Simple Python class for managing tables of data in memory using NumPy. It allows to give names to views of array. The package contains few classes built on top of the basic one to be used as post processing tools for particle optics computations.
    Downloads: 0 This Week
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