Showing 384 open source projects for "website using python"

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  • 1
    mitoMaker

    mitoMaker

    mitoMaker - a mitochondria assembly and annotation script

    mitoMaker is a pipeline script developed to simplify the assembly and automatic annotation of mitochondrial genomes, based on raw NGS reads and an optional target reference. mitoMaker calls well known assemblers and algorithms, such as SOAPdenovo, MIRA and blast+ and parses their results providing easily readable outputs, such as FASTA, GENBANK, SEQUIN, PNG and others. General pipeline: 1-iterative De Novo assembly, with different k-mer values, trying to assemble a build that matches...
    Downloads: 0 This Week
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  • 2
    Cospace Dance

    Cospace Dance

    Robot for cospace dance

    A complete set of code to build your own robot for cospace dance using: raspberry pi, arduino, xbee and blender,
    Downloads: 0 This Week
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  • 3

    globalsoilmap.net/GSIF AG toolbox

    facilitating predictions of parameters using statistical models

    streamline the DSM process in ArcGIS/Numpy/GDAL/Python using Sampling, Statistical elaboration, Prediction to allow the application of extended statistical models generated by the CUBIST (TM) or JMP (TM) software to a set of auxiliary input parameters, thereby bypassing the need to i) manually calculate the equations using Raster calculator; ii) use a grid-to-point conversion process prior to applying the prediction model in the statistical software itself and then a point-to-grid conversion process.
    Downloads: 0 This Week
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  • 4

    ReorJS

    Distributed Computing with JavaScript

    Create your own distributed computer that can distributed javascript based applications to any computer with a web browser, headless browser or node.js installation. For more information and updates please see our website - http://reorjs.com.
    Downloads: 0 This Week
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  • Go from Data Warehouse to Data and AI platform with BigQuery Icon
    Go from Data Warehouse to Data and AI platform with BigQuery

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  • 5

    xPyder PyMOL Plugin

    Analyze and visualize coupled residues and their networks in proteins

    xPyder is a PyMOL plugin to analyze and visualize on the 3D structure dynamical cross-correlation matrices (DCCM), linear mutual information (LMI), communication propensities (CP), intra- and inter-molecular interactions (e.g. PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data...
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  • 6
    GGI stands for "General Graphics Interface", and it is a project that aims to develop a reliable, stable and fast graphics system that works everywhere. We want to allow any program using GGI to run on any platform requiring at most a recompile.
    Downloads: 19 This Week
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  • 7
    NanoCap

    NanoCap

    Carbon Fullerene and Capped Nanotube Generator

    NanoCap is a generic application for the construction of low energy fullerene and capped nanotube structures. It provides an ideal tool to accompany the study of finite carbon molecules using computer simulation. The implementation involves a standalone application which includes a GUI and allows for dynamic visual inspection through 3D rendering. In addition, the NanoCap core libraries can be used in custom Python scripts that enabled the user to produce structures in bulk or to include the structure generation routines into pre-existing code.
    Downloads: 2 This Week
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  • 8
    .... ######################## ROOTPWA is a toolkit for partial-wave analysis of multi-particle final states produced in high-energy particle reactions. It is used to determine hadron spectra from experimental data. NOTE: The code is only accessible through the git repository in the "Code" section of this website. Please refer to the README file on how to get and install ROOTPWA and on how to contribute to the project. In case you are using ROOTPWA on a regular basis, please consider signing up for our low-traffic user's mailing list. In case you encounter problems using ROOTPWA, please use the bug-ticket system to get help.
    Downloads: 0 This Week
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  • 9
    Protospacer

    Protospacer

    Rapid gRNA design and validation for CRISPR

    Sign up to our mailing list at http://www.protospacer.com/contact.html. Protospacer allows researchers to build, analyze, and share their own database of CRISPR target-sites. This enables the development of custom libraries and helps to transfer the CRISPR technology to new organisms. Each Protospacer database is a simple catalogue of all possible Cas9 target-sites within a given FASTA sequence, i.e. all NGG/NAG sites. Protospacer then allows the user to sub-select targets from the...
    Downloads: 0 This Week
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  • 10

    Advanced Numerical Instruments 2D

    Advanced numerical instruments: adaptive meshing, FE methods, solvers

    Ani2D provides portable libraries for each step in the numerical solution of systems of PDEs with variable tensorial coefficients: (1) unstructured adaptive mesh generation, (2) metric-based mesh adaptation, (3) finite element discretization and interpolation, (4) algebraic solvers.
    Downloads: 0 This Week
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  • 11

    Latest on Arxiv

    Parse the latest Arxiv RSS stream and get your institute preprints

    ...I provide this software as a demonstration on how we do it at the Kapteyn Astronomical Institute. The script is run daily as a cron command. Feel free to take and modify this code any way you want. But if you are using it, I'd love to at least here from you and know I didn't put this up for nothing. The program has no major prerequisites, except the Python package pyPdf. It is build for Python 2.6.x series, but will probably work on many others as well.
    Downloads: 0 This Week
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  • 12
    GSI Student ToolBox
    GSI student toolbox is a software package made for teaching purposes. It allows you to perform seismic inversion using global sthocastic inversion method made within CERENA/CMRP. NOTE: you can perform the same operations done with GSI Student Toolbox with our newest software GEOMS2. You can download the beta release here: https://sourceforge.net/projects/geoms2/
    Downloads: 0 This Week
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  • 13
    Hi-Visibility Calculator

    Hi-Visibility Calculator

    A basic calculator with features for people with visual impairments

    A basic calculator with features for people with visual impairments. Check out our website below for details:
    Downloads: 0 This Week
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  • 14
    wiki export tool

    wiki export tool

    A tool for exporting Wikipedia data

    A simple tool, created in a French project "CoMeRe", for exporting data from all Wikimedia fundation projects, include Wikipedia. To use this, you need prepare two things: Target dump of Wiki Target page name Then, configure the tool with dump path and input the page name, finally just let's it run, you will get the target page. Duration is dependent on size of the dump, and the number of pages. Take care for using option "talk, other talk...", this is now only for french corpora.
    Downloads: 0 This Week
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  • 15
    DS-Frame2D

    DS-Frame2D

    2D Frame Analysis, Linear Static Analysis, Mode Shapes

    ...It calculates reaction forces, diagrams of axial and shear forces, as well as, diagrams of bending moments. Moreover, it calculates the mode shapes of the structure using various methods and it will be cabable of performing dynamic analysis soon. The program is written in FORTRAN90 and the GUI in Python. At the moment it is available only in 64bit version for windows.
    Downloads: 15 This Week
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  • 16
    IRPF90
    WARNING: Project moved to http://github.com/scemama/irpf90 IRPF90 is a Fortran90 preprocessor written in Python for programming using the Implicit Reference to Parameters (IRP) method. It simplifies the development of large fortran codes in the field of scientific high performance computing.
    Downloads: 0 This Week
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  • 17

    Planar Roof Top Detection in LiDAR

    This tool detects and classifies roof tops from raw spatial LiDAR

    A new algorithm for extracting roof tops was developed. Using the assumption that roof tops are planar in construction, a new approach was developed using volume of point clouds to determine whether a cluster contains planar points. This approach yields very promising results and with attention applied to its weaknesses, should provide another algorithm which can rival currently available roof top detection methods.
    Downloads: 0 This Week
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  • 18
    3D shape descriptor which explicitly captures the local geometry and encodes it using an efficient representation. Our method consists of multiple evolving fronts which are realized by a set of growing spheres on the surface.
    Downloads: 0 This Week
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  • 19

    Scientific data elaborator

    The data elaborator is a new project to manage scientific data

    This program can make histograms, table and graphics of datas, study the error propagation during a measure, it is usefull if you have to do study errors propagations. The output are latex files, so it is easy for you just put them into your relations.
    Downloads: 0 This Week
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  • 20
    FineSplice

    FineSplice

    Enhanced splice junction detection and estimation from RNA-Seq data

    FineSplice is a Python wrapper to TopHat2 geared towards a reliable identification of expressed exon junctions from RNA-Seq data, at enhanced detection precision with small loss in sensitivity. Following alignment with TopHat2 using known transcript annotations, FineSplice takes as input the resulting BAM file and outputs a confident set of expressed splice junctions with the corresponding read counts.
    Downloads: 0 This Week
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  • 21

    pymatlab

    A pythonic interface to MATLAB

    This package lets Python users interface and communicate with MATLAB from Python. Pymatlab makes it easier for users to integrate a project with a large MATLAB codebase into python scripts by using MATLAB scripts as a part of the python program. The basic functionality of this package is to send data from Python to MATLAB's workspace to be able to run Matlab function on the data. ...
    Downloads: 0 This Week
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  • 22
    Gas Turbine Developer
    "gtdev" is an open source tool which assists the engineer in developing a new gas turbine (1D Thermo- and Aerodynamics). It is created by the student research group "Hummingbird - TUM Gas Turbines" placed at the LFA, TU Munich: http://www.hummingbird.tum.de
    Downloads: 0 This Week
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  • 23
    Event based simulator that allow to yield from nested function. Implemented using greenlet and standard thread python library.
    Downloads: 0 This Week
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  • 24

    PyGAO

    Genetic Algorithm Optimization for Python

    A simple interface for performing genetic algorithm optimization for numerical problems. I am starting with a stripped-down version, where a solution can be described using a single vector of float numbers. Eventually, I will expand to more generic data structures and add multiple-species search options. For the time being, I have no plans of developing a GUI. For now, this is strictly a computational module. In addition to the standard Python libraries, PyGAO uses numpy.
    Downloads: 0 This Week
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  • 25

    VisualRiSC

    Toolbox visualizing computations of Realizable Sign Conditions.

    ...VisualRiSC provides implementations of such notions and functions using the Python package SymPy, on the one hand, and an interface to Gnuplot in order for a visualization of examples using the Python package Gnuplot.py.
    Downloads: 0 This Week
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