Showing 1565 open source projects for "gnu"

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  • 1
    CS-NPSA

    CS-NPSA

    Nonpolar Surface Area from Continuum Solvation

    The Continuum Solvation Nonpolar Surface Area (CS-NPSA) package is a general purpose program suite for defining and computing nonpolar surface areas based on continuum solvation models. It is based on the classification of individual surface elements representing the solvent accessible surface used for the description of the polarized charge density elements in the CS models.
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  • 2

    FusionCatcher

    Somatic fusion-genes finder for RNA-seq data

    FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples. The aims of FusionCatcher are: - very good detection rate for finding candidate fusion genes, - very easy to use (i.e. no a priori knowledge of databases and bioinformatics is needed in order to run FusionCatcher), - very good detection of challenging fusion genes, like for example IGH...
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    Downloads: 103 This Week
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  • 3
    --- IMPORTANT : This project has been moved to GitHub at https://github.com/clstoulouse/motu-client-python. Download the last version from the release page https://github.com/clstoulouse/motu-client-python/releases. --- Motu is a high efficient and robust Web Server which fills the gap between heterogeneous Data Providers to End Users. Motu handles, extracts and transforms oceanographic huge volumes of data without performance collapse. This client enables to extract and...
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  • 4
    Gato (Graph Animation Toolbox): Animate graph algorithms for example for computing shortest paths, minimal spanning trees, maximum flows or maximal cardinality or weight matchings. Create your own animations using the Animated Data Structures (ADS).
    Downloads: 0 This Week
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    GeoSolver

    A Python library for solving geometric constraint problems

    GeoSolver is a Python library for solving geometric constraint problems. A graphical testing and demostration application, the Geometric Constraint Workbench is included with the software.
    Downloads: 0 This Week
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  • 6
    parent-map

    parent-map

    Analyze parental contributions to evolved or engineered protein or DNA

    Documentation: https://parent-map.readthedocs.io/
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  • 7
    bioweb

    bioweb

    polyglot language framework to analyze genetic data

    polyglot framework using Python/C++/JavaScript to fast develop applications to analyze biological sequences
    Downloads: 0 This Week
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  • 8
    medical image analysis

    medical image analysis

    Libraries and command line tools for medical image processing.

    This software provides libraries and command line tools for the processing and analysis of gray scale medical images.
    Downloads: 0 This Week
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  • 9
    dsam
    The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
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  • 10
    SUM Calculator

    SUM Calculator

    Portable bundle for Windows

    This is a PORTABLE app bundle for WINDOWS. No installation required! (Uncompressed size is about 60Mb because of required libraries for all Windows versions from XP to 10. The application is incomparably small.) Unzip, run sumcalc.exe. That's it! You can put the folder wherever you want, except system folders with permissions (e.g. Program Files), and create a shortcut if needed. Cross-platform source and...
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  • 11
    ModbusPal - a Java MODBUS simulator
    ModbusPal is a project to develop a PC-based Modbus simulator. Its goal is to reproduce a realistic environment, with many slaves and animated register values. Almost everything in ModbusPal can be customized and controlled by scripts.
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    Downloads: 123 This Week
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  • 12

    Brewery HMI

    Web app for all-grain brewers. Automate your electric brewery.

    This project is UI to guide the user through the steps of home brewing. Each beer has a recipe of ingredients, but it also has a “recipe” for the process to make the beer. This app allows you to load a recipe (BeerXML), guide you through the brewing steps and record any details so that you can improve next time. By default, this app relies on user inputs and feedback from the real-world. There are easy hooks to a link up a real system, so that if you wanted to automate some of the...
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  • 13
    yabasta

    yabasta

    Yet Another BAsic Scraper and Text Analysis

    YA BASTA! is a Python/R application for Lyrics Web Scraper and Text Analysis. Web scraping is developed in Python, text analysis in R as Python subprocesses. YA BASTA! is only tested on windows OS. To run YA BASTA! just type on window command prompt: python.exe yabasta.py
    Downloads: 0 This Week
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  • 14
    D0rganizer

    D0rganizer

    Program to manage data and information

    Store collected information and data properly using D0rgnizer (The organizer). Create cases, folders, files, and insert images. Compare information between files, and export data to share with your team. Useful for data collection in investigations, ethical hacking, and more.
    Downloads: 0 This Week
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  • 15
    The new version of MinimPy (MinimPy2) is available for download at: https://osdn.net/dl/minimpy2/MinimPy2.zip Please send your feedback about this new version to mahmood.saghaei@gmail.com (include MinimPy2 in the subject) ============================================================ MinimPy is a desktop application program for sequential allocation of subjects to treatment groups in clinical trials by using the method of minimization. Comprehensive reference help is available at...
    Downloads: 6 This Week
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  • 16
    GPlates

    GPlates

    Interactive visualization of plate tectonics.

    GPlates is a plate-tectonics program. Manipulate reconstructions of geological and paleo-geographic features through geological time. Interactively visualize vector, raster and volume data. PyGPlates is the GPlates Python library. Get fine-grained access to GPlates functionality in your Python scripts.
    Downloads: 2 This Week
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  • 17
    A tool for managing bibliographic databases (BibTeX, Refer,...) through an user friendly interface.
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    Downloads: 10 This Week
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  • 18
    iHome by ionware

    iHome by ionware

    iHome Smart Home System Platform

    iHome is a fully tested Smart Home Automation system using the Raspberry Pi Zero WiFi SBC and Linux OS and has all the functional features of NEST or ECOBEE smart thermostats with the added benefit of full privacy and security at less than half the price! It incorporates MBLogic with algorithms and Modbus coms for HVAC home control via the ionware modbus compatible ionC1 input/output controller board. The iHome software system comes fully configured as a SD Card image file for...
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  • 19
    OverlApp
    A simple tool to compute extent of spatial overlap associated with electronic transitions based on natural transition orbitals (NTOs)
    Downloads: 0 This Week
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  • 20
    The Player Project: Player is a networked interface to robots and sensors. Stage and Gazebo are Player-friendly multiple-robot simulators. The software aims for POSIX compliance and runs on most UNIX-like OS's. Some parts also work on Windows.
    Downloads: 3 This Week
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  • 21
    ombakwarna

    ombakwarna

    Spreadsheet based graphical and analysis software

    OmbakWarna is a spreadsheet based graphical analysis software utilizing numpy and matplotlib as analysis and graphic tools. Its design is inspired by IgorPro software. It is licensed under GNU General Public License, version 2. This is still works in progress. Some widgets are without functionality. There is no manual yet, but a few videos were uploaded to the files section showing simple tutorials for some plotting capabilities. The videos are also available in youtube: https://www.youtube.com/channel/UCg7yftEQ37fb8z89w9twhaQ
    Downloads: 0 This Week
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  • 22
    LINARP - Linarp Is Not A Rietveld Program; Software for the analysis of crystallographic data
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  • 23

    Spectral Python

    A python module for hyperspectral image processing

    Spectral Python (SPy) is a python package for reading, viewing, manipulating, and classifying hyperspectral image (HSI) data. SPy includes functions for clustering, dimensionality reduction, supervised classification, and more.
    Downloads: 0 This Week
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  • 24
    CBMPy

    CBMPy

    PySCeS Constraint Based Modelling

    PySCeS CBMPy is a new platform for constraint based modelling and analysis. It has been designed using principles developed in the PySCeS simulation software project: usability, flexibility and accessibility. CBMPy supports the latest standards for encoding CBM models encoding, SBML L3 FBC, COBRA as well as MIRIAM compliant RDF and custom annotations. Its architecture is both extensible and flexible using data structures that are intuitive to the biologist while transparently...
    Downloads: 0 This Week
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  • 25
    MGFVisor

    MGFVisor

    Visor for mass spectrometry MGF files

    Visor for mass spectrometry MGF files (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/mgfvisor3/code/ci/default/tree/README.md
    Downloads: 0 This Week
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