Showing 247 open source projects for "bns-tools"

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  • 1
    SeqSelector

    SeqSelector

    Tools to select sequences for capture enrichment of next-gen libraries

    The SeqSelector toolset is a suite of user-friendly, platform independent python scripts to facilitate selection of sequences for targeted enrichment of next-generation libraries through hybridization-based sequence capture. The scripts require no knowledge of programming, and can be applied to genome sequences of model or non-model species. We suggest a workflow in which genes of interest are first identified from previous studies and publicly available datasets of functional gene...
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  • 2

    acp245

    ACP245 Suite: Brazil Telematics protocol implementation

    This "suite" includes a portable reference implementation and testing tools for ACP245, the automotive Telematics protocol defined by Brazil government. see: http://www.denatran.gov.br/simrav/simrav.asp
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  • 3
    wfProc is going to be a Python module for waveform processing. The module will incude simple operations such as addition, subtraction etc, taking into account the timeline of the waveform, as well as filtering, fft and other more complex operations.
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  • 4
    tigreBrowser is a web-based browser for ranking results from R/Bioconductor package tigre and similar tools. It allows easy viewing, sorting and filtering of visualisations of models produced by tigre.
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  • 5

    Physic Research Tools

    Python, Physics, PyQt, Software, Data adquisition, Spectroscopy, UV

    Como técnico en informática en un Instituto de Física con el tiempo surgió la necesidad de tener que crear distintas piezas de software para ir resolviendo situaciones diarias. En este proyecto iré agregando pequeños programas en Python 2.7 que voy escribiendo para dar soluciones a algunos de los problemas que surgen día a día en el laboratorio, como ser comunicación con algunos dispositivos o rutinas para ordenar o modificar datos de forma recursiva algunos cálculos matemáticos, creación...
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  • 6
    Donatus is an on-going project consisting of Python, NLTK-based tools and grammars for deep parsing and syntactical annotation of Brazilian Portuguese corpora. It includes a user-friendly graphical user interface for building syntactic parsers with the NLTK, providing some additional functionalities.
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  • 7
    MoDAVE aims at providing data analysis and visualization extensions to Mosaic datasets, including cubed sphere data, to the Climate Data Analysis Tools (CDATA) in particular.
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  • 8
    LibreEngineering
    LibreEngineering - suite of instrumentation, electrical, mechanical, process engineering calculation and design programs and other tools. Licensed under GPL3. Written in Python with Qt toolkit.
    Downloads: 1 This Week
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  • 9

    Tuque

    Tools for mapping RNA-Seq reads to eukaryotic genomes

    Tuque includes 4 programs: tuqueIndex to prepare Bowtie indexes that include spliced sequences tuqueMap to map reads using the prepared indices tuqueSplice to find splice junctions from the reads tuqueCount to count the reads mapping within annotated sequence intervals
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  • 10
    ScreenSifter

    ScreenSifter

    ScreenSifter is a unique tool for RNAi Screen analysis and management

    ...User can upload their raw signal intensities and will avail complete quality control of screen, hit selection, plotting of hit genes with gene ontology, comparing of replicates or comparing of channels. In addition, ScreenSifter has visualization tools to plot specific genes or gene groups in the screen data. ScreenSifter also provides Gene Set Enrichment Analysis (GSEA), protein-protein interaction directly on the plot. Publication: ScreenSifter: analysis and visualization of RNAi screening data Pankaj Kumar, Germaine Goh, Sarawut Wongphayak, Dimitri Moreau and Frédéric Bard BMC Bioinformatics. 2013 Oct 3;14(1):290. ...
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  • 11
    Math tools in Python to tackle down problems in Operational Research fields. Comes with a Django based web interface to allow remote access to complex simulation means.
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  • 12

    SLiMScape

    A Protein Short Linear Motif Analysis Plugin for Cytoscape

    SLiMScape adds Short linear motif discovery tools to Cytoscape, transforming it into a SLiM discovery platform. A tutorial is available at the following URL: http://bioware.ucd.ie/slimscape/
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  • 13
    The Python Unified Membrane Analysis Toolkit is a suite of python tools for analyzing molecular dynamics simulations of membranes.
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  • 14
    ddsweet is collection of tools and routines for science calculation and simulation.
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  • 15
    A set of very optimized tools for indexing/querying huge genomes/files. Provided so far: a very fast exact mapper, and an unconstrained split-mapper
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    Downloads: 156 This Week
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  • 16

    Dvipdfm tool for SCons

    SCons tool to cooperate with dvipdfm program

    SCons is a make replacement providing a range of enhanced features such as automated dependency generation and built in compilation cache support. SCons rule sets are Python scripts so as well as the features it provides itself SCons allows you to use the full power of Python to control compilation. This is a SCons extension (tool) which enables usage of the dvipdfm program to convert dvi files to pdf.
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  • 17
    GIIAF Microscopy Library

    GIIAF Microscopy Library

    The GIIAF Microscopy Library, that uses customised OMERO software

    This project incorporates a suite of tools that aim to allow researchers within Griffith's Imaging and Image Analysis Facility (GIIAF) to efficiently and effectively provide secure, centralised, web-accessible data storage, management and manipulation. The open-source Java-based OMERO software was customised to provide most of the features of this project.
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  • 18

    convert2orcazmatrix

    Python script that converts regular zmatrix to orca-zmatrix format.

    Since I use GUI tools which only save the molecules to regular zmatrix format. I created a script that would convert the regular format to the special orca format. It is written in python and can be used like this. usage: convert2orcazmatrix.py [-h] -i INPUTFILE [-o OUTPUTFILE]
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  • 19
    Bifurcation Analysis Library
    A C++ library for the computation of bifurcation diagrams: it provides tools for the integration of systems of ODEs that depend on parameters. A Python interface is included.
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  • 20

    Electrophysiology & circular stats tools

    Data analysis and circular statistics with OpenElectrophy and R

    Set of tools for basic analysis of electrophysiological data. The Python classes show how to call OpenElectrophy functions and save data. The R library applies circular statistics to spike phase data and saves the best von Mises fit and the Rayleigh statistics on the disk. The wavelet coherence analysis is done in R by the package "sowas".
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  • 21

    Otto's Workshop

    Geomatics & mapping tools for the masses!

    The purpose of this workshop is to share the tools created as an aid to our everyday work with students, enthusiasts and specialists interested in the development and use of new technologies including (but not limited to) geomatics, mapping, web mapping services (WMS), drafting, remote sensing, GIS and related occult sciences of Gaia. Check out the NBR (dn2nbr) and NDVI (dn2ndvi) calculating tools for GRASS GIS at the top menu!!!
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  • 22
    PROJECT MOVED: see http://www.vmtk.org for up-to-date information. Libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis in image-based blood vessel modeling.
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  • 23
    PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
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  • 24

    metaProt

    Pipeline to analyze coding regions in metagenomic projects

    metaProt is a python pipeline to analyze and extract data from protein sequences found in metagenomic projects. It integrates several existing tools (HMMer, Pepstats, Blast...) to be used against custom databases. Please, read the README.txt file to find more about this.
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  • 25
    proper
    Command-line tool to calculate error propagation. Generates the error formulas and applies them to the data.
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