Showing 572 open source projects for "alpha linux"

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  • 1

    Pyclamp

    A Python package used to extract and analyse electrophysiological data

    Pyclamp is Python package used to extract and analyse electrophysiological data. A graphical user interface has been developed to allow a user to run the pack- age without requiring any knowledge of Python code. Presently, Pyclamp is designed to perform very specific forms of analysis on evoked synaptic responses: Data analysis (under development) : This is a highly user-interactive en-vironment that can be used to discriminate synaptic events, obtain various measures of their kinetics...
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  • 2
    finFoil is an application to help amateur surfboard fin makers foil their fins properly. All downloads are moved to https://finfoil.io Check out the homepage for the latest news and tutorials: https://finfoil.io hrobeers
    Downloads: 0 This Week
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  • 3
    Copy Number Analysis for Targeted Resequencing (CONTRA) is a tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.
    Downloads: 5 This Week
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  • 4
    Theodore is a tool for semi-automated hybrid assembly of genomes, improving assembly quality by combining multiple information sources.
    Downloads: 0 This Week
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  • 5
    ChannelFinder Directory Service
    Generic directory service (for the EPICS tool set). Directory entries are channels with properties and tags. Applications can query a web service to retrieve channels based on wildcard matching on properties and tags, and manipulate the directory data. Code has been moved to GitHub at https://github.com/ChannelFinder
    Downloads: 0 This Week
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  • 6
    **we moved to github** https://github.com/gimli-org/gimli Geophysical Inversion and Modeling Library
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  • 7

    SAT-Assembler

    Scalable and accurate targeted gene assembly for large-scale NGS data

    SAT-Assembler is a scalable and accurate gene assembly tool for large-scale RNA-Seq and metagenomic data. It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms.
    Downloads: 0 This Week
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  • 8
    Square Genome Annotator
    Squere is a prokaryote genome annotation user-friendly software, with easy installer and graphical interface.
    Downloads: 0 This Week
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  • 9
    Python Control Systems Library

    Python Control Systems Library

    Feedback control system analysis and design

    The Python Control Systems Library, python-control, is a python module that implements basic operations for analysis and design of feedback control systems. This homepage for this project is at http://python-control.org and the code base in maintained at https://github.com/python-control/python-control. Information on this page is out of date, but left here for posterity.
    Downloads: 3 This Week
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  • 10
    Graphical tool for managing database of geocaches and waypoints, importing GPX files and exporting geocaches to many formats including GPX, POI, HTML and others.
    Downloads: 0 This Week
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  • 11

    Mathpad

    A Python based command line math utility.

    Mathpad is a command line utility. It will later have a GUI, but not at this time.
    Downloads: 0 This Week
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  • 12

    ipcvis

    Visualize Inter Process Communication

    Small python script that can visualize Inter Process Communication on Linux. It can create a graph of TCP and Unix sockets, pipes and also process hierarchy. Short (59 sec) demo visualizing ssh client connecting to ssh server on the same Ubuntu host: http://youtu.be/8XFKwzkexQY Longer (2 min 13 sec) demo visualizing ZoneMinder surveillance solution operation (stopping, starting, enabling and viewing camera): http://youtu.be/kM7klE61Ibk Tested on Ubuntu 14.10 and Debian...
    Downloads: 0 This Week
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  • 13

    QG fantasy maps plugins

    Some pythons plugins to enhance fantasy maps creation with QGis

    QGis permit the use of python script to handle maps. Here are some python code ready to use and modify, and some associated samples.
    Downloads: 0 This Week
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  • 14
    scipion-xmipp

    scipion-xmipp

    Image processing framework to integrate EM software packages.

    Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated...
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  • 15
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  • 16

    KEMP

    A FDTD solver for electromagnetic wave simulations on a GPU cluster

    KEMP is a fast FDTD solver on a GPU-based cluster. The FDTD (Finite-Difference Time-Domain) method is a popular numerical method for electromagnetic field simulations. KEMP enables hardware accelerations suitable for multi-GPU, multi-core CPU and GPU cluster. KEMP also provide easy configuration by using Python scripting language.
    Downloads: 0 This Week
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  • 17
    PhyloTrack

    PhyloTrack

    PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples

    PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting...
    Downloads: 0 This Week
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  • 18

    GnuVet

    Open Source Vet Practice Management

    Veterinary Practice Management program for management, documentation, accounting etc. in the veterinary practice. Easy to use, intuitive structure. python + PyQt4, postgres database as storage engine. PRE-ALPHA!
    Downloads: 0 This Week
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  • 19

    FingerID

    Metabolite identification via machine learning.

    [NOTICE!] FingerID since version 1.4 will be hosted on github: https://github.com/icdishb/fingerid A metabolite identification software using tandem mass spectrometry and kernel methods. The related paper can be found at http://bioinformatics.oxfordjournals.org/content/early/2012/07/18/bioinformatics.bts437.abstract. Now it supports unix/linux like system.
    Downloads: 0 This Week
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  • 20

    wmtsa-python

    Discrete wavelet methods for time series analysis using python

    Several python libraries implement discrete wavelet transforms. However, none of them, or at least none that I know, is aimed at scientific use. This library aims at filling this gap, in particular considering discrete wavelet transform as described by Percival and Walden. This module started as translation of the wmtsa Matlab toolbox (http://www.atmos.washington.edu/~wmtsa/), so most naming conventions and most of the code structure follows their choices. The code uses a mix of python and...
    Downloads: 0 This Week
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  • 21
    MapFramer

    MapFramer

    Create cartographic map frames from an XML template

    mapframer is a commandline program that reads a map frame specification from an XML-file and outputs a map frame to a PDF-file.
    Downloads: 0 This Week
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  • 22
    Corbomite
    Data logger, manipulator and visualizer. Receives data in CSV format from stdio.
    Downloads: 0 This Week
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  • 23

    ThermV

    Comprehensive thermal analysis software package

    ThermV thermal analysis software package aims to provide the most sophisticated automatic analysis of thermal analysis data (TG/DTG, DTA and DSC). It offers new algorithm for concurrent peak deconvolution at different heating rates and provides full kinetic analysis of these data, including isoconversional methods for Ea, determination of reaction model and full kinetic triplet, Avrami coefficients, and dimensionality of crystal growth for reactions in the solid state. The project is...
    Downloads: 2 This Week
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  • 24
    A python framework for fuzzy inference computations
    Downloads: 0 This Week
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  • 25
    SAMoCAD

    SAMoCAD

    Simple CAD program

    SAMoCAD - its program to create simple drawings, partially supports DXF. Main features: - create simple objects (line, arc, circle) - create complex objects (text, dimensions) - edit drawn objects - save drawing to SVG format - output drawing in PostScript format - export/import content DXF files (primitives LINE, CIRCLE, ARC, TEXT, DIMENSION) Program written in Python 2 and use the library Tkinter. Program requires no installation, but you need install Python 2.7 or later on...
    Downloads: 0 This Week
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