Search Results for "project-open" - Page 29
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Showing 2231 open source projects for "project-open"
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That project aims at providing a clean API and a simple implementation, as a C++ library, of an Airline-related Inventory Management system. That library uses the Standard Airline IT C++ object model (http://sf.net/projects/stdair).
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QG fantasy maps plugins
Some pythons plugins to enhance fantasy maps creation with QGis
QGis permit the use of python script to handle maps. Here are some python code ready to use and modify, and some associated samples. -
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AsiEs stands for Asistente de Escritura (writing assistant). It provides word prediction and autocomplete for fast writing. Thought for people with difficulties writing on keyboard, improves the writing speed preventing the user from pressing at most 50% of keys to write and avoids ortographic errors. Made by Fundación Teletón Uruguay (http://www.teleton.org.uy/home/)
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pure python polyfit
python2/3: compute polyfit (1D, 2D, N-D) without thirdparty libraries
python2/3: compute polyfit (1D, 2D, N-D) without any thirdparty library like numpy, scipy etc. also can be used for least squares solution computation and for A=QR matrix decomposition. Tested with python 2.7 and 3.4 Consider donating to this project: https://sourceforge.net/p/purepythonpolyfit/donation For a Sample use, refer to the WIKI -
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Collective Mind Technology
plugin-based framework for systematic and reproducible experimentation
New version moved to http://github.com/ctuning/ck Collective Mind framework (cM) is an open-source plugin-based schema-free repository and infrastructure for collaborative, systematic and reproducible research and experimentation. This 3rd version (started in 2006) helps to implement, preserve, share and reproduce the whole experimental setup as connected modules and data. cM uses crowdsourcing to leverage knowledge and computational resources of multiple users. -
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DEAPathways
Differential Expression Analysis for Pathways
This project contains the source code associated with the PLoS Computational Biology publication: "Differential Expression Analysis for Pathways". The paper text can be found here: http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002967 -
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LoFreq
Fast and sensitive variant-calling from sequencing data
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Maximum Common Genome Alignment (MCGA)
Pipeline for creating core genome alignments for phylogenetic analysis
Maximum Common Genome Alignment (MCGA) Tool MCGA is a bioinformatics analysis tool written in Python for generating core genome alignment for bacterial whole genome sequences which can be used to construct phylogenetic trees. -
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PyOPD-Cass
Application for data reduction using the 1.6 m telescope Perkin-Elmer
Application for data reduction using the 1.6 m telescope Perkin-Elmer and the spectrograph cassegrain -
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Virus QSP Modeling
C++ and Python code for simulating RNA virus replication
Stochastic simulation model of poliovirus Sabin-to-Mahoney genetic state transition (C++ code). Models genotypes, virus populations, and quasispecies cloud. Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files. -
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Phobos Application
Software for recording rodents' behavior during behavioral tests
Phobos is to be used for recording rodents' behavior during the thigmotaxis (open-field) and the elevated plus-maze tests. Phobos provides the possibility to easily calculate all possible experimental parameters at once immediately after the evaluation of the fear/anxiety level of each animal. All extracted files can be readily combined to one in order for statistical analyses to be performed. If you use Phobos for your research, please cite: Telonis AG, Margarity M.Phobos: a novel software for recording rodents' behavior during the thigmotaxis and the elevated plus-maze test. ... -
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scipion-xmipp
Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated... -
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RPy is a very simple, yet robust, Python interface to the R Programming Language. It can manage all kinds of R objects and can execute arbitrary R functions (including the graphic functions). RPy has been superseded by the RPy2 project: https://rpy2.github.io/
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The goal of PyTables is to enable the end user to efficiently and easily manipulate large datasets (both homogenous, i.e. arrays, and heterogenous, i.e. tables) on a persistent, hierarchical way.
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binana
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyzing ligand binding. The program identifies key binding characteristics like hydrogen bonds, salt bridges, and pi interactions. As input, BINANA accepts receptor and ligand files in the PDBQT format. PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. As output, BINANA describes ligand binding. NOTE: The latest version of BINANA is now hosted at... -
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**(9 march 2016) this project is continued on github : http://jaapkroe.github.io/polypy ** Python script to analyze (shortest-path) rings in structures read from xyz-files. It can be useful for example to identify defects in crystal structures or molecules.
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This (Python) tool allows you to easily create FPGA bitfiles for your embedded system, from several Open Source IPs (compatibles with the OpenCores Wishbone bus) . It will also generates the corresponding drivers (currently only Linux ones).
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Alfanous
Quran Search Engine
Alfanous (The Lantern - الفانوس ) is an Arabic search engine API provide the simple and advanced search in the Holy Quran , more features and many interfaces... -
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Fluid2D
Fluid2D is the Swiss army knife of 2D CFD
Fluid2D allows to study a wide variety of 2D flows. It is written entirely in Python. It is both a teaching code and a research code, capable of running from one core to thousands. Its numerics has been chosen to yield to as small dissipation as possible allowing to simulate easily high Reynolds flows, much higher than any of its concurrents. High performances are achieved by writting most of the operations as matrix-vector multiplications, handled by numpy that itself relies on the highly... -
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This project provides a Fortran90 library and a python module for singular spectrum analyses such as PCA/EOF or MSSA. It is intended for people interested, for example, in analysing climate or financial variability.
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MicrobeGPS
The Explorative Taxonomic Profiling Tool for Metagenomic Data
MicrobeGPS is a bioinformatics tool for the analysis of metagenomic sequencing data. The goal is to profile the composition of metagenomic communities as accurately as possible and present the results to the user in a convenient manner. One main focus is reliability: the tool calculates quality metrics for the estimated candidates and allows the user to identify false candidates easily. -
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GASiC
Genome Abundance Similarity Correction
One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by... -
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PanelCheck is an easy-to-use software tool for visualization of sensory profiling data using different types of plots. The joint information from the implemented plots provide detailed insight into assessor and panel performance.
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ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW....