Showing 1461 open source projects for "research"

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  • 1
    sigrok
    The sigrok project aims at creating a portable, cross-platform, Free/Libre/Open-Source signal analysis software suite that supports various device types, such as logic analyzers, MSOs, oscilloscopes, multimeters, LCR meters, sound level meters, thermometers, anemometers, light meters, dataloggers, function generators, power supplies, GPIB interfaces, and more.
    Downloads: 1 This Week
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  • 2
    Black Spot Leaf Area Calculator

    Black Spot Leaf Area Calculator

    Automated leaf area estimation from scanned leaf images

    Black Spot is a free stand alone software and method to estimate leaf area from images of leaves captured using standard flatbed scanners. This easy to use software allows the user to batch process a large number of samples from multiple species with minimal user input.
    Downloads: 3 This Week
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  • 3
    Open-source weather database system for storage of weather/water observations, forecasts, analysis fields, and hindcasts. includes loading program for GRIB files. Visit project website (http://wdb.met.no) for further information. Please note: this project has now moved to http://wdb.met.no
    Downloads: 1 This Week
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  • 4

    AMBIENT

    Find active modules in metabolic networks using high-throughput data

    IMPORTANT: Since publication of the AMBIENT method in BMC Sys Bio, several updates have been made. If you wish to use the version used in the paper it is v0.6.3, however I recommend using the latest version which works in the same way but with additional options and has stability and performance improvements. Thanks for your interest! AMBIENT (Active Modules for Bipartite Networks) is a Python module that uses simulated annealing to find areas of a metabolic network (modules) that have...
    Downloads: 0 This Week
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  • 5

    Dvipdfm tool for SCons

    SCons tool to cooperate with dvipdfm program

    SCons is a make replacement providing a range of enhanced features such as automated dependency generation and built in compilation cache support. SCons rule sets are Python scripts so as well as the features it provides itself SCons allows you to use the full power of Python to control compilation. This is a SCons extension (tool) which enables usage of the dvipdfm program to convert dvi files to pdf.
    Downloads: 0 This Week
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  • 6

    GS junior Webserver

    GS junior Webserver

    GS junior Webserver is a web based file server to easily access sequencing data of
    Downloads: 0 This Week
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  • 7
    A set of very optimized tools for indexing/querying huge genomes/files. Provided so far: a very fast exact mapper, and an unconstrained split-mapper
    Downloads: 4 This Week
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  • 8
    GarlicSim is an ambitious open-source project that attempts to redefine the way that people think about computer simulations, making a new standard for how simulations are used. It is not hosted on SourceForge; Visit http://garlicsim.org to get it.
    Downloads: 0 This Week
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  • 9
    PyMbs has moved to Bitbucket: https://bitbucket.org/pymbs/pymbs PyMbs is a Python library for modelling holonomic multibody systems. It is able to generate simulation code for Python, Modelica and Matlab.
    Downloads: 0 This Week
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  • 10

    pyTRAX

    ODEs solver with GUI

    This small program named TRAX is capable of solving systems of ordinary differential equations and plotting the solution on a phase plane as well as function of time. The program is intended for educational purposes. The program runs on any Python-enabled platform, including GNU/Linux and MS\Windows OSs. To run the program you will need a python interpreter ver. 2.x and compatible versions of numpy, scipy and matplotlib libraries. See screenshot for usage reference.
    Downloads: 0 This Week
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  • 11

    dAnalytics

    dAnalytics is a software made for education in discriminant analysis.

    dAnalytics is a software made for educational purposes to work with discriminant analysis. It's a very simple calculator over bi-dimensional populations. You input a file with two columns (one for each variable) and tryout different separations of populations (blue and red) and analyze it's efficiency by observing the eigen value result for the attempted separation. It also gives many information about the statistics both of the input and the separated populations. There's a documentation...
    Downloads: 0 This Week
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  • 12
    BRAHMS is a Modular Execution Framework for dynamical systems. It knits together independently-authored software modules implementing dynamical processes into an integrated system, and supervises the deployment and execution of that system.
    Downloads: 2 This Week
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  • 13
    OpenRAVE
    Moved to https://github.com/rdiankov/openrave An open-source, cross-platform, plugin-based robot planning environment for autonomous robotics. Includes services like collision detection, physics, (inverse) kinematics, sensors, robot controls, python bindings, and a network scripting environment.
    Downloads: 1 This Week
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  • 14
    This ROS (Robot Operating System) repository contains the ROS packages for using ROS with the Webots mobile robot simulation software.
    Downloads: 0 This Week
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  • 15

    Mix

    Mix is a tool to combine multiple assemblies from NGS data.

    Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices represent extremities of contigs and edges represent existing alignments between these extremities. These alignment edges are used for contig extension. The resulting output assembly corresponds to a path in the extension graph that maximizes the...
    Downloads: 0 This Week
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  • 16
    IMPORTANT: The project moved over to github! You can find it at: https://github.com/exhuma/python-cluster
    Downloads: 1 This Week
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  • 17
    The igraph library

    The igraph library

    Library for creating and manipulating graphs

    This is a library for creating and manipulating graphs with focus on speedy operations for large, sparse graphs.
    Downloads: 0 This Week
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  • 18
    Application to create 'electronic fluorescent pictographic' representations of gene expression patterns. Created at the Provart lab of the department of Cell & Systems Biology, University of Toronto.
    Downloads: 1 This Week
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  • 19
    GEPETTO - Gene Prioritization in Java

    GEPETTO - Gene Prioritization in Java

    GEPETTO (GEne Prioritization ExTended TOol)

    GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein...
    Downloads: 0 This Week
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  • 20
    Rapid application development environment for high-level control of particle accelerators.
    Downloads: 0 This Week
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  • 21
    WTMParse

    WTMParse

    Python script to parse Unix-like WTMP files

    Python script that was originally intended for use in forensic examinations that parses WTMP files from Unix-like operating systems and generates a CSS-styled HTML report containing login terminal, username, log start date and login time/date in a table. Good for postmortem forensic examinations or as a way of getting "last" like information where you don't have the ability to boot the machine in question but can grab the wtmp.
    Downloads: 2 This Week
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  • 22

    Ablator

    A tool for automating laser ablations for neuroscience

    Ablator is a suite of software that automates the microscopic detection of cell targets and also directs a 2-photon microscope to lesion these targets in arbitrary patterns for neuroscience research. See Hayes et al 2012 for an example of its usage (http://www.pnas.org/content/109/21/8286.abstract).
    Downloads: 0 This Week
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  • 23
    EduLB

    EduLB

    The educational lattice Boltzmann code

    EduLB is a small and easy to handle lattice Boltzmann code for channel flow. Main objective is to give interested people the opportunity to play around and see how things work. For feedback, leave a review, leave a comment on the discussion page or send me a private mail.
    Downloads: 1 This Week
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  • 24
    Package to interface and control an Astromech Droid (Star Wars' R2-D2 and friends) replica using Willow Garage's ROS Robot Operating System. Please visit http://astromech.net for info on Astromech replicas and ros.org for info on the ROS system.
    Downloads: 0 This Week
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  • 25
    Evoversum
    This project has been moved to https://bitbucket.org/pbazant/evoversum/src/master/ . Evoversum is a fast Darwinian evolution simulator. The program simulates a 2D world populated with "animals" which struggle for food, reproduce and may also eat each other. The subject of evolution is their behavior, which may become quite complex. There is an updated video tutorial at http://www.youtube.com/watch?v=nPkZvyVDWJU !
    Downloads: 0 This Week
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