Search Results for "latest" - Page 2
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Showing 42 open source projects for "latest"
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binana
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz
...PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. As output, BINANA describes ligand binding. NOTE: The latest version of BINANA is now hosted at http://git.durrantlab.com/jdurrant/binana . Versions on SourceForge are not up to date. -
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LipidWrapper
Create lipid-bilayer models of arbitrary geometry.
LATEST VERSION NOW LOCATED AT http://git.durrantlab.com/jdurrant/lipidwrapper As ever larger and more complex biological systems are modeled in silico, approximating physiological lipid bilayers with simple planar models becomes increasingly unrealistic. When building large-scale models of whole subcellular environments, models of lipid membranes with carefully considered, biologically relevant curvature are essential. -
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Latest on Arxiv
Parse the latest Arxiv RSS stream and get your institute preprints
Latest on Arxiv is a program/script with a simple job to do. Every day, it will download all pdf files from your favorite Arxiv RSS, and will then scan it to see if any authors from your favorite institute(s) are on there. If so, it will save the resulting index. The matched files are then parsed into a short list, featuring only the latest 4 preprints (which is ideal for a single TV screen in the coffee corner), and a long list which contains every paper in a clickable way. ... -
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C++, Matlab and Python library for Hidden-state Conditional Random Fields. Implements 3 algorithms: LDCRF, HCRF and CRF. For Windows and Linux, 32- and 64-bits. Optimized for multi-threading. Works with sparse or dense input features.
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N.Tesla
Numerical Transient Simulator for Power System
June 24, 2021. This project has been updated to STEPS project at github since March 21, 2018. Please go to https://github.com/changgang/steps for latest version. _______________________________ Great news. Version 0.6.6 is released with HVDC and Switched shunt model for powerflow. Please leave feedback to the developer. N.Tesla is an open source project to provide students and researchers of EE with a tool to implement new models for power system study and research. N.Tesla is short for Numerical TransiEnt SimuLAtor for power system and is in memory of Nikola Tesla, one the greatest scientists in alternating current power system. ... -
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RFlex
Spectroradiometer control for shipborne reflectance measurements
...The software incorporates GPS signal parsing, control of the sensor platform viewing angle (stepper motor control), sensor triggering and data recording. Continue to the download section for the latest release information Rrs data processing code (the 'fingerprint technique') is also available - but moved to my github page: https://github.com/StefanSimis -------- Oct 2014: a beta version is available (20141006) Sep 2014 news: The latest version is 20140723, addressing some bugs. See the change log. Enjoy! Two Rflex units collected over 30,000 validated Rrs spectra on the Baltic Sea this year! ... -
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Create, check, annotate, merge, diff, split SBML (System Biology Markup Lanugage) documents. The latest version of semanticSBML is webbased with a RESTful interface.
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ctqa-cp
Automatic analysis of CT images of the CatPhan600/504 phantom
Hosted at google code, for latest version please go to: https://code.google.com/p/ctqa-cp/ Automatic image quality analysis of computed tomography images of the CatPhan? phantom. CTQA is a software package to aid in quality assurance of image quality for CT scanners. The software currently only supports analysis of CT-images of the CatPhan600? phantom. Other phantoms may be supported upon request. -
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WISP
Weighted Implementation of Suboptimal Paths (WISP)
UPDATE: LATEST VERSION AT http://git.durrantlab.com//jdurrant/wisp Allostery can occur by way of subtle cooperation among protein residues (e.g., amino acids) even in the absence of large conformational shifts. Dynamical network analysis has been used to model this cooperation, helping to computationally explain how binding to an allosteric site can impact the behavior of a primary site often many angstroms away. -
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AMBIENT
Find active modules in metabolic networks using high-throughput data
IMPORTANT: Since publication of the AMBIENT method in BMC Sys Bio, several updates have been made. If you wish to use the version used in the paper it is v0.6.3, however I recommend using the latest version which works in the same way but with additional options and has stability and performance improvements. Thanks for your interest! AMBIENT (Active Modules for Bipartite Networks) is a Python module that uses simulated annealing to find areas of a metabolic network (modules) that have some consistent characteristic. AMBIENT does not require predefined pathways and gives highly specific predictions of affected areas of metabolism. ... -
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pyscope
Software oscilloscope using Python and tkinter
...Scales the input automatically or manually. It has been renamed "pdatascope" to avoid a name-clash with Pyscope, a scoping package on PyPi. See https://sourceforge.net/p/pydatascope/ for the latest code. -
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UPDATE: The latest version of NNScore1 can be found here: http://git.durrantlab.com/jdurrant/nnscore1 The latest version of NNScore2 can be found here: http://git.durrantlab.com/jdurrant/nnscore2 ================ NNScore is a scoring function for characterizing the potency of receptor-ligand complexes. It is based on neural networks, computational models that simulate the microscopic organization of the brain.
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The Virtual Commons (http://commons.asu.edu) is an open software initiative devoted to computational experiments on collective action and resource governance and funded by Arizona State University's Center for Behavior, Institutions, and the Environment (http://cbie.asu.edu). NOTE: we've moved our development to GitHub at https://github.com/virtualcommons - please look for the latest versions there.
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MathBench
A Python IDE optimized for scripting and easy access to documentation.
...touser=1865508 if you want to take over this project** Mathbench is intended for the development of short scripts such as those daily used when doing research in applied mathematics and physics. Simple widgets and a strong plugin system make it useful and extensible. ANNOUCEMENT: Mathbench's purpose is still relevant and could also benefit from the latest improvements of the wxPython toolkit. However, for lack of time, it is not actively developped anymore. Feelf you want to take over this project, I'd be happy to let it evolve in other hands. I might ask a few questions on what you intend to do before giving up all control on it though :) -
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SAGE is a free and open source mathematics software available from http://www.sagemath.org. The latest version (as of Jan 2012) is 4.7. Please do NOT download the much older version from sourceforge!
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PyCrust is an interactive Python shell written in Python using wxPython. PyCrust is now part of wxPython (www.wxpython.org), so packaged files are no longer available here, and the latest development version has moved to the wxWindows CVS repository.
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malty_DEPRECATED
translates alignments of A-to-B and B-to-C to A-to-C; has BAM support
Development moved to: https://bitbucket.org/rongchenlab/malty Docs moved to: http://malty.readthedocs.org/en/latest/
