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  • 1
    gVirtualXRay

    gVirtualXRay

    Virtual X-Ray Imaging Library on GPU

    gVirtualXRay is a C++ library to simulate X-ray imaging. It is based on the Beer-Lambert law to compute the absorption of light (i.e. photons) by 3D objects (here polygon meshes). It is implemented on the graphics processing unit (GPU) using the OpenGL Shading Language (GLSL). SimpleGVXR is a smaller library build on the top of gVirtualXRay. It provides wrappers to Python, R, Ruby, Tcl, C#, Java, and GNU Octave.
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    Downloads: 28 This Week
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  • 2
    GNNPCSAFT

    GNNPCSAFT

    Smart Thermodynamic Modeling with Graph Neural Networks

    ...In this app, the estimated pure-component parameters can be used to calculate thermodynamic properties and compare them with experimental data from the ThermoML Archive. To install the GNNPCSAFT app, download the appropriate latest release from the Files, unzip the file, and run the executable for your operating system (Linux or Windows). More info on github repository.
    Downloads: 4 This Week
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  • 3
    PhiPsi

    PhiPsi

    An eXtended Finite Element Method (XFEM) Software.

    ...PPView can be used to import Abaqus inp file, view the model defined in the PhiPsi keywords file (*.kpp), edit PhiPsi keywords file, perform a PhiPsi simulation, and view the simulation result files generated by PhiPsi. PPView contains the latest executable program of PhiPsi. Features of PhiPsi: ○ Supported analysis type: 2D, 3D static analysis; 2D, 3D hydraulic fracturing analysis; 2D, 3D dynamic analysis; and 2D field problems analysis. ○ Support as many as 1000 fractures, voids and inclusions. ○ Intersection of 2D and 3D fractures, intersection of fracture and voids or inclusion...
    Downloads: 2 This Week
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  • 4
    ALAMODE

    ALAMODE

    Ab initio simulator for thermal transport and lattice anharmonicity

    ...Using the anharmonic force constants, you can also calculate lattice thermal conductivity from first principles. For more information about ALAMODE, please visit the following webpages: Documentation : http://alamode.readthedocs.io/en/latest/ git repository : https://github.com/ttadano/alamode
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    Downloads: 39 This Week
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  • 5
    CBMPy

    CBMPy

    PySCeS Constraint Based Modelling

    PySCeS CBMPy is a new platform for constraint based modelling and analysis. It has been designed using principles developed in the PySCeS simulation software project: usability, flexibility and accessibility. CBMPy supports the latest standards for encoding CBM models encoding, SBML L3 FBC, COBRA as well as MIRIAM compliant RDF and custom annotations. Its architecture is both extensible and flexible using data structures that are intuitive to the biologist while transparently translating these into the underlying mathematical structures. . CBMPy implements popular analyses such as FBA, FVA, element/charge balancing, network analysis and model editing as well as advanced methods developed for the ecosystem modelling. ...
    Downloads: 6 This Week
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  • 6

    Simple Python Fixed-Point Module

    Pure-python binary fixed-point arithmetic library

    ...The number of fractional binary digits is tunable, allowing near-arbitrary precision arithmetic. Arithmetic & functions such as sqrt, exp, log, sin & cos are available. For the latest releases please visit https://github.com/rwpenney/spfpm
    Downloads: 3 This Week
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  • 7

    Moose

    Multiscale Neuroscience and Systems Biology Simulator

    Moose is the core of a modern software platform for the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, large networks, and systems-level processes. We have moved Github.com. This should be your source for the latest version of the code.
    Downloads: 0 This Week
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  • 8

    LipidWrapper

    Create lipid-bilayer models of arbitrary geometry.

    LATEST VERSION NOW LOCATED AT http://git.durrantlab.com/jdurrant/lipidwrapper As ever larger and more complex biological systems are modeled in silico, approximating physiological lipid bilayers with simple planar models becomes increasingly unrealistic. When building large-scale models of whole subcellular environments, models of lipid membranes with carefully considered, biologically relevant curvature are essential.
    Downloads: 0 This Week
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  • 9

    N.Tesla

    Numerical Transient Simulator for Power System

    June 24, 2021. This project has been updated to STEPS project at github since March 21, 2018. Please go to https://github.com/changgang/steps for latest version. _______________________________ Great news. Version 0.6.6 is released with HVDC and Switched shunt model for powerflow. Please leave feedback to the developer. N.Tesla is an open source project to provide students and researchers of EE with a tool to implement new models for power system study and research. N.Tesla is short for Numerical TransiEnt SimuLAtor for power system and is in memory of Nikola Tesla, one the greatest scientists in alternating current power system. ...
    Downloads: 0 This Week
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  • 10

    WISP

    Weighted Implementation of Suboptimal Paths (WISP)

    UPDATE: LATEST VERSION AT http://git.durrantlab.com//jdurrant/wisp Allostery can occur by way of subtle cooperation among protein residues (e.g., amino acids) even in the absence of large conformational shifts. Dynamical network analysis has been used to model this cooperation, helping to computationally explain how binding to an allosteric site can impact the behavior of a primary site often many angstroms away.
    Downloads: 0 This Week
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