Open Source Python Scientific/Engineering Software - Page 14

PySparse - A Sparse Matrix Library for Python

Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE)

xPyder is a PyMOL plugin to analyze and visualize on the 3D structure dynamical cross-correlation matrices (DCCM), linear mutual information (LMI), communication propensities (CP), intra- and inter-molecular interactions (e.g. PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data using a modular, user-expandable plugin system that takes advantage of structural and dynamical information, contributing to bridge the gap between dynamical and mechanical properties at the molecular level.

xrayutilities is a python package used to analyze x-ray diffraction data. It can support with performing diffraction experiments and used for common steps in the data analysis. It can read experimental data from several data formats (spec, edf, xrdml, ...); convert them to reciprocal space for arbitrary goniometer geometries and different detector systems (point, linear as well as area detectors); for further processing the data can be gridded (transformed to a regular grid). More detailed description as well as documentation can be found at webpage http://xrayutilities.sourceforge.io/. Downloads for windows can be found on http://pypi.python.org/pypi/xrayutilities Development is performed on github: https://github.com/dkriegner/xrayutilities

PyQwt = FAST and EASY data plotting for Numerical Python and PyQt. PyQwt is a Python wrapper for the Qwt C++ class library which extends the Qt framework with widgets to display and control data for scientific and engineering applications. Please note: We moved RCS, future releases, BUGS to https://github.com/PyQwt

- Save and open a Work/Project (spf) file - Single fitting/ Batch fitting (user defined custom func) - Matrix to XYZ in Tool menu - Symbol plot: makers, curve, landscape, bar, etc. - Implemented a 3d surface plot (GLSurface) based on OpenGL (ScienPlot v1.3.2 and above) - ColorMap surface, trisurface, Pie, Polar plots, and 3D height field, 3dBar, scatter plots (under developing), and more - Column by column plotting/calculation - LaTex commands enclosed by $ symbols can be used for the labels in Graph - Accept txt(Text) and csv(Comma separated values) formatted data - Save, copy, print Graph - Use spread sheets to display data - Textboard to organize the results - Graphs in a publishable quality - Source codes based on: Python Numpy Scipy Matplotlib WxPython Visvis etc. - Special functions - Drag and drop data files - Python console is back (since v1.3.3), capable of reusing column data - Debye and Guinier models for SANS / SAX data - More apps in our Web below

openGPR is a framework for the management, processing and 2D/3D-visualization of ground penetrating radar (GPR, georadar) data. It interoperates with existing tools like Seismic Unix, with a special focus on georadar applications.

An object-oriented Python Interface to Frontline PCB's Genesis 2000 CAD/CAM/CAE system.

The Helsinki Finite-State Transducer toolkit is intended for processing natural language morphologies. The toolkit is demonstrated by wide-coverage implementations of a number of languages of varying morphological complexity.

General hydraulic calculations. Cylinder selection and calculations. Multiple cylinder sequencing with graph output. Tubing selection and calculations. Viscosity graphing for various oils. DC Valve flow vs. pressure drop calculations.

LingoGeek translates whole documents on your own machine. Word, PDF, SRT and VTT subtitles, Markdown and plain text, with no character limit. Most translation tools want pasted text, or cap you at one document a month. LingoGeek takes the file itself and has no cap at all, because nothing is uploaded. Headings, lists, tables, headers and footers keep their place in a Word document. Subtitle timings and cue numbers are copied through exactly, so only the spoken lines change. Your original is never touched. The translation is written as a new file beside it. Drop in a folder full and they go through one after another, block by block. Language packs are downloaded once and then it works offline. No account, no adverts, no telemetry. Open source under GPL-3.0. Windows 10 or 11, 64 bit.

Pretty Damn Quick (PDQ) analytically solves queueing network models of computer and manufacturing systems, data networks, etc., written in conventional programming languages. Generic or customized reports of predicted performance measures are output.

PyNanoLab contains a variety of tools to complete the data analysis, statistics, curve fitting, and basic machine learning application. Visualization in pynanolab is based on matplotlib. The setup tools is desinged to control and set-up all the details of the figure with a GUI.

Voice keyboard/dictation. Aims to be a total substitute for a keyboard. Spell out words letter by letter (using code: alpha, bravo, ..). Arrow keys, modifiers work. Speak whole words (but whole word accuracy is not good). Attach commands to some word

The goal of Motorsport is to become the most realistic simulation of wheeled vehicles possible. The addition of cars and tracks will be a simple task, and there will be a system for customization of most of the simulator features.

Pink is an image processing library developed at ESIEE Engineering for research and teaching purposes. It contains implementations of over 200 algorithms for image segmentation and filtering.

A tool to calculate atoms exposition to a probe in a three dimensional molecule structure.

ExcelPython is a lightweight, easily distributable library for interfacing Excel and Python. It enables easy access to Python scripts from Excel VBA, allowing you to substitute VBA with Python for complex automation tasks which would be facilitated by Python's extensive standard library. v2 is a major rewrite of ExcelPython! - see GitHub site for more details. LICENSE NOTICE MIT License, please see new GitHub site for more details. Copyright 2012-2014 by Eric Reynolds.

ED Software project contains several programs used (mostly) for processing gas-phase electron diffraction (GED) experimental data.

IFEFFIT is a library and set of interactive programs for the analysis of x-ray absorption fine-structure (XAFS) data. IFEFFIT combines state-of-the-art analysis algorithms with graphical display of XAFS data, and general data manipulation. It can be

The NUMIPAD library implements several methods/algorithms to solve inverse problems and adaptive decomposition (i.e. Tikhonov regularization, Total Variation, Basis Pursuit, etc.)

PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration of the results

PYroMat brings the thermodynamic properties of nearly 1,000 species to Python users with only a few keystrokes. Entropy, enthalpy, specific heats, inverse functions, and more are available from ideal gases, their mixtures, and multi-phase steam. Accurate, fast, and tested; PYroMat is the open-source solution for students, researchers, design engineers, and tinkerers everywhere who need thermodynamic properties.

A univariate and multivariate analysis UI. This project is no longer under development. Please use as you wish.