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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
GUI front-end to sequest.exe proteomics searchengine, developed in Perl.
For more information, you can have a look at the README.md file in the source code tree:
https://sourceforge.net/p/lp-csic-uab/sequestgui/code/ci/default/tree/README.md
- Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining.
GUI front-end for the OMSSA proteomics searchengine.
For more information, you can have a look at the README.md file in the source code tree:
https://sourceforge.net/p/lp-csic-uab/omssagui/code/ci/default/tree/README.md
- Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining.
This project contains a set of php/perl scripts to analyze Cisco IOS-XR routers PE configuration, providing an html output which is very useful to surf over configurations.
Moreover, it contains some other functions to search and compare configurations (access-list, prefix-sets, route-maps ...) between XR and IOS routers, and to analyze syslog data.
It is not intended for "normal" end-users, but for network administrators and operations groups.
Secure File Transfer for Windows with Cerberus by Redwood
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G.R.E.A.T. - Google Earth Reporting Engine and Analysis Tool The Goal of this project is to create a basic IDS interface with Google Earth. Currently generates a KML file of traceroute/whois information suitable for use in Google Earth
ProPHAnE: Proteomics result Pruning and Homology group Annotation Engine A perl script based workflow for annotation of protein data coming from the 'Mascot' (Matrix Science) and 'Scaffold' (Proteome Software) pipeline.
Coming soon: Prophane 2, "a much improved and extended version of Prophane based on HTML5, PHP and MySQL. Most importantly, the pipeline includes now functional predictions on profile Hidden Markov models (HMMs), is fully-automated, and can be controlled via a highly intuitive and user-friendly interface." ...
TSE is a test bed for a web service approach to federating taxonomic name databases. Put in English, it takes your query and talks to a number of different databases, asking each one whether they contain that name.
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Mobilemaps is a Nearby Engine which allows users to find Web
pages by location. Extremely fast and capable of scaling to any number
of pages, it supports OpenGIS map-servers and uses MySQL, Perl and C.
The Internet Censor is a multi-platform, Internet clustering program, for which the resulting data will be used in the creation of a non-profit content-filtering Internet SearchEngine for children.
jake (aka Jointly Administered Knowledge Environment) supports the management of and linking between online resources and descriptions thereof. jake consists of a database containing information about online journals, databases, search interfaces, and tex