Showing 203 open source projects for "no database"

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  • Red Hat Enterprise Linux on Microsoft Azure Icon
    Red Hat Enterprise Linux on Microsoft Azure

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  • 1
    The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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    Downloads: 76 This Week
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  • 2

    MView

    Extract and reformat a sequence database search or multiple alignment

    NOTE: The MView repository and web pages have moved to: https://github.com/desmid/mview https://desmid.github.io/mview/ Release tarballs will continue to be uploaded to SourceForge. ---- MView is a command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats. Inputs...
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    Downloads: 11 This Week
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  • 3

    mers

    Portable software and data related to Mersenne numbers

    Portable software related to Mersenne numbers. Useful to automate certain tasks related to GIMPS (www.mersenne.org) for computers that cannot run the GIMPS software for whatever reason. Much of the code has been in use since 1990 or so by a few people. The project web site at https://mers.sourceforge.io/mersenne.html has data about Mersenne numbers from many people generated by this and other software, notably from the GIMPS project.
    Downloads: 4 This Week
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  • 4
    An innovative Open Source CEP (Complex Event Processing) engine. It implements the event stream processing as a library embeddable in C++ and Perl. You can think of the Complex Event Processing engine as an in-memory database driven by triggers, or a data-flow machine, or a spreadsheet on steroids (and without the GUI part).
    Downloads: 0 This Week
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  • User Testing Platform | Testeum Icon
    User Testing Platform | Testeum

    Get worldwide testers to review your software, app or website! Quickly find bugs and usability issues in less than 48 hours.

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  • 5

    BIGSdb

    Software for storing and analysing bacterial sequence data

    The Bacterial Isolate Genome Sequence Database (BIGSdb) is a scalable, web-accessible database system designed to store and analyse linked phenotypic and genotypic information in a computationally efficient manner. Sequence data can range from single sequence reads to multiple contigs generated by whole genome sequencing technologies. The system incorporates the capacity to define and identify any number of loci and genetic variants at those loci within the stored nucleotide sequences...
    Downloads: 0 This Week
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  • 6
    Coati is a web development framework and API for genome databases that supports multiple database vendors and database schemas.
    Downloads: 0 This Week
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  • 7
    RefDB is a reference database and bibliography tool for SGML, XML, and LaTeX documents, sort of a Reference Manager or BibTeX for markup languages. It is portable and known to run on Linux, Free/NetBSD, OSX, Solaris, and Windows/Cygwin.
    Downloads: 5 This Week
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  • 8
    miRDP2

    miRDP2

    Accurately and fast analyzing microRNAs transcriptome in plants

    miRDeep-P2 (miRDP2) is developed to accurately and fast analyze microRNAs (miRNAs) transcriptome in plants. It is adopted from miRDeep-P (miRDP) with new strategies and overhauled algorithm. We have tested miRDP2 to analyze miRNA transcriptomes in such plants with gradually increased genome size as Arabidopsis, rice, tomato, maize and wheat. Compared with miRDeep-P and several other computational tools, miRDP2 processed NGS data with superior speed. By incorporating newly updated plant miRNA...
    Downloads: 32 This Week
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  • 9

    mapska

    The Murder Accountability Project's Serial Killer Algorithm

    A much improved Linux/Perl implementation of the Murder Accountability Project's Serial Killer Algorithm. This module was tested with the "SHR76_19.csv" available from www.murderdata.org/p/data-docs.html. This module provides functions to prepare the data, upload to a database and view the identified clusters. Download SHR76_19.csv (23/03/2021) - https://www.dropbox.com/s/ye37woe6et05qgs/SHR76_19.csv.zip?dl=1 For information on this algorithm and the Murder Accountability Project please...
    Downloads: 0 This Week
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  • 10
    C-squares

    C-squares

    Concise spatial query and representation system (c-squares)

    C-squares is an easily implemented method for storage, querying and display of spatial data locations, based on a hierarchical, grid-based representation of the Earth' surface. Source code for encoding, decoding, mapping, etc. is provided via this site. Additional support is available by contacting the system developer, Tony.Rees@marinespecies.org; see also the c-squares home page at http://www.cmar.csiro.au/csquares/ .
    Downloads: 0 This Week
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  • 11
    TaxOnTree

    TaxOnTree

    A program for associating taxonomic information in a phylogenetic tree

    TaxOnTree is a phylogenetic program for associating Taxonomic information in a phylogenetic tree. The output is a NEX format tree file configured to be opened in FigTree, that users can promptly color by any taxa or by the ancestrality shared by sequences with query. Input can be a Fasta formatted file to be used in a BLAST search or a list of sequences represented by their identifiers (UniProtAC or NCBI gi), if a cluster is already available. Also, a newick file produced with user software...
    Downloads: 0 This Week
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  • 12
    The Elvira project is a suite of tools to perform high-throughput genomic assemblies of repetitive, structured samples such as viruses or targeted regions of larger genomes.
    Downloads: 0 This Week
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  • 13
    guglinatts-en

    guglinatts-en

    Guglina TTS, special edition: in English (guglinatts-en)

    Guglina TTS, special edition: in English (guglinatts-en), is a voice synthesizer originally designed for Brazilian Portuguese. Uses the Google Translate text-to-speech API. Read screens for the visually impaired. Transforms text into audio, allowing blind or low-vision people to access content displayed on the screen. Although the main target audience for text-to-speech conversion systems - such as Guglina TTS EN - is people with visual impairment, this type of program can be used by people...
    Downloads: 1 This Week
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  • 14
    guglinatts-it

    guglinatts-it

    Guglina TTS, edizione speciale: in italiano (guglinatts-it)

    Guglina TTS, edizione speciale: in italiano (guglinatts-it), è un sintetizzatore vocale originariamente progettato per il portoghese brasiliano. Utilizza l'API di sintesi vocale di Google Traduttore. Leggi gli screenshot per gli ipovedenti. Trasforma il testo in audio, consentendo a persone non vedenti o ipovedenti di accedere al contenuto visualizzato sullo schermo. Sebbene il pubblico di riferimento principale per i sistemi di conversione da testo a voce - come Guglina TTS IT - sia...
    Downloads: 0 This Week
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  • 15
    guglinatts

    guglinatts

    sintetizador de voz, em português do Brasil, que usa a API do Google

    Guglina TTS é um sintetizador de voz, em português do Brasil, que usa a API de conversão de texto em fala do Google Tradutor. Lê telas para portadores de deficiência visual. Transforma texto em áudio, permitindo que pessoas cegas ou com baixa visão tenham acesso ao conteúdo exibido na tela. Embora o principal público-alvo de sistemas de conversão texto-fala – como o Guglina TTS – seja formado por pessoas com deficiência visual, esse tipo de programa pode ser usado por pessoas com dislexia e...
    Downloads: 0 This Week
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  • 16

    selectseq

    Get specific sequences from a FASTA or FASTQ file.

    A command-line utility to manipulate biological sequences from a FASTA or FASTQ file. It can, given a list of identifiers, get only a subset of the sequences (or their complement, i.e., sequences NOT in the list). Can also get sequence number N only. Compressed sequences files are supported if readable by zcat.
    Downloads: 0 This Week
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  • 17
    This project contains the software for extracting bioinformatics data (sequences, features and annotations) from TIGR's legacy schemas as well as support for efficiently loading data into chado from BSML.
    Downloads: 0 This Week
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  • 18

    sybil

    A web-based software package for comparative genomics

    Sybil is a web-based software package for comparative genomics
    Downloads: 0 This Week
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  • 19
    scriptLattes is an open-source system to create academic reports of groups based on curricula vitae of the Brazilian Lattes Database.
    Downloads: 1 This Week
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  • 20
    aioulinux

    aioulinux

    Linux for Arduino and Makers developers

    Hello, I'm the Aioulinux founder, eager to professionally revive the project. Since 2018, the demand for an IoT and Arduino-tailored environment has been evident. Seeking partners for a 2024 version targeting schools and IoT companies, aiming for a secure and comprehensive platform. If you share this vision and wish to collaborate, reach out. Let's revive Aioulinux stronger than ever! Now seeking partners: Live Distro Specialist: Expert in live distributions to ensure...
    Downloads: 3 This Week
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  • 21
    Accent Tool Suite

    Accent Tool Suite

    Accent interfaces and controls systems through goals and policies

    Accent (Advanced Component Control Enhancing Network Technologies) is a comprehensive tool suite that interfaces a variety of communications systems and allows these systems to be controlled through goals (high-level user aims) and policies (lower-level system rules). Accent has been applied to the domains of: o Call Control: for telecommunications, particularly call control in Internet telephony o Home Care: for home automation and telecare, particularly for domestic appliances...
    Downloads: 0 This Week
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  • 22
    KH Coder

    KH Coder

    Quantitative Content Analysis or Text Mining

    ************************************************************ THIS PROJECT IS MOVED. See http://khcoder.net/en for the latest & greatest. You can download this tool from the new home. See you there! ************************************************************
    Downloads: 0 This Week
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  • 23
    HitKeeper is a database application for use in BioInformatics. It deals with "hits" (predicted features) on biological sequences (protein, DNA), handles incremental updates effectively, supports taxonomy, and provides original query tools.
    Downloads: 0 This Week
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  • 24
    Kinannote

    Kinannote

    Protein Kinase Identification and Classification

    Kinannote identifies and classifies protein kinases in a user-provided fasta file using an HMM derived from serine/threonine protein kinases, a position specific scoring matrix derived from the HMM, and comparison with a local version of the curated kinase database from kinase.com. If the user inputs a complete proteome, additional modules evaluate the completeness of the kinome and place it in context with reference kinomes. Kinannote runs on a unix command line and depends on local hmmer 2...
    Downloads: 0 This Week
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  • 25
    Generic Model Organism Database Project
    GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.
    Downloads: 0 This Week
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