Search Results for "jade code source"
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Showing 64 open source projects for "jade code source"
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SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools
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Bridge Designer and Contest
A national virtual bridge engineering contest for kids of all ages.
This version of Bridge Designer is deprecated. Release distribution binaries have been removed since 1 July 2026. The new ASCE Bridge Designer is a web app available at http://asce.org/bridge-designer. Please use and enjoy the new app! We thank all project supporters and users for decades of contributions. The new support channel is bridgedesignerteam@gmail.com The national contest is no longer active. Several regional contests exist worldwide. The new Bridge Designer includes tools... -
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bbbike
An information system for cyclists in Berlin and Brandenburg
A bike information system for cyclists in Berlin and Brandenburg (Germany) with a map view and a routing engine. There's a graphical interface (based on Perl/Tk) as well as an Web interface. Source code may be found at Github: https://github.com/eserte/bbbike/ -
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BIGSdb
Software for storing and analysing bacterial sequence data
...See Jolley and Maiden 2010, BMC Bioinformatics 11:595 (http://www.biomedcentral.com/1471-2105/11/595). You can report bugs or make enhancement requests using the issues tracker at https://github.com/kjolley/BIGSdb. The source code is also mirrored there. -
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Source code from the Research Institute for Signals, Systems and Computational Intelligence http://fich.unl.edu.ar/sinc
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CSI-Math-Notation-PostfixInfix
Perl Lib Math Notation
* Introduction: - This Module is a Library based Perl code. - The library provide: - Convert INFIX expressions to POSTFIX; - Convert POSTFIX expressions to INFIX and; - Perform POSTFIX context validations. - Context validation can be implemented in item selection routines or data context validation, when it is possible to identify data to be selected or ignored in some data analysis process. * NOTE: - Before any implementation, we recommend details in WIKI... -
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The Simplest Manual Counter
Manual counter with the keyboard or the mouse on images
The only open source counter to count any items the simplest and easiest way with the keyboard, or the mouse specifically on images. After associating a key to each item, or a predefined graphical symbol for images, pressing the key or clicking on the image increments its associated counter, and displays (for the images) the symbol at the mouse's pointer location. Such a project is so simple a child could use it! -
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LP CSIC/UAB Apps and Code
Software and Code from Laboratori de Proteòmica CSIC/UAB
Software, Code and Documents from Laboratori de Proteòmica CSIC/UAB ( LP-CSIC/UAB: http://proteomica.uab.cat ) -
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This is software to create web dictionaries, esp. for Esperanto like Reta Vortaro (http://reta-vortaro.de). A dictionary is made from articles written in a special XML dialect by transformations using XSLT, ant and some Java code.
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Error to trace to log to deploy. One click. No SSH.AppSignal links every error to the trace, the trace to the log, the log to the deploy that shipped it.
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TA-Lib.git: Technical Analysis Library
Mirror of the TA-Lib project using a Git repository
This project is intended to provide Git access to the code of the original project, TA-Lib, which uses Subversion. It is intended for system integrators wishing to use TA-Lib in their Git-managed project through Git submodules or subtrees. No actual development is being done here; all development happens in the original project. -
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C-squares
Concise spatial query and representation system (c-squares)
C-squares is an easily implemented method for storage, querying and display of spatial data locations, based on a hierarchical, grid-based representation of the Earth' surface. Source code for encoding, decoding, mapping, etc. is provided via this site. Additional support is available by contacting the system developer, Tony.Rees@marinespecies.org; see also the c-squares home page at http://www.cmar.csiro.au/csquares/ . -
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TaxOnTree
A program for associating taxonomic information in a phylogenetic tree
TaxOnTree is a phylogenetic program for associating Taxonomic information in a phylogenetic tree. The output is a NEX format tree file configured to be opened in FigTree, that users can promptly color by any taxa or by the ancestrality shared by sequences with query. Input can be a Fasta formatted file to be used in a BLAST search or a list of sequences represented by their identifiers (UniProtAC or NCBI gi), if a cluster is already available. Also, a newick file produced with user software... -
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COHCAP
City of Hope CpG Island Analysis Pipeline
...Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through GitHub. 2) In addition to the original NAR paper, please see the following links: Benchmarks: http://www.nature.com/protocolexchange/protocols/2965#/introduction Protocol Exchange Files: http://sourceforge.net/projects/cohcap/files/Protocol_Exchange_Example.zip 3) Custom Annotation Files (including EPIC Array): https://sourceforge.net/projects/cohcap/files/additional_Bioconductor_annotations.zip/download -
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OmssaGUI
GUI front-end for OMSSA
GUI front-end for the OMSSA proteomics search engine. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/omssagui/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124 -
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SequestGUI
GUI front-end to sequest.exe
GUI front-end to sequest.exe proteomics search engine, developed in Perl. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/sequestgui/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124 -
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FastaTools
Performs several operations to Fasta protein databases
FastaTools performs several operations to Fasta protein databases. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/fastatools/code/ci/default/tree/README.md Or you can download the Documentation an Tutorial PDF file in the Files section: https://sourceforge.net/projects/fastatools.lp-csic-uab.p/files/FastaTools%20Documentation%20and%20Tutorials.pdf - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). ... -
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SmGen
Verilog Finite State Machine (FSM) Code Generator
SmGen is a finite state machine (FSM) generator for Verilog. On the other hand, it is not an FSM entry tool. The input is behavioral Verilog with clock boundaries specifically set by the designer. SmGen unrolls this behavioral code and generates an FSM from it in synthesizable Verilog. Clock boundaries are explicitly provided by the designer so there is good control on the expected timing -
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aioulinux
Linux for Arduino and Makers developers
Hello, I'm the Aioulinux founder, eager to professionally revive the project. Since 2018, the demand for an IoT and Arduino-tailored environment has been evident. Seeking partners for a 2024 version targeting schools and IoT companies, aiming for a secure and comprehensive platform. If you share this vision and wish to collaborate, reach out. Let's revive Aioulinux stronger than ever! Now seeking partners: Live Distro Specialist: Expert in live distributions to ensure... -
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As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the...
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Accent Tool Suite
Accent interfaces and controls systems through goals and policies
Accent (Advanced Component Control Enhancing Network Technologies) is a comprehensive tool suite that interfaces a variety of communications systems and allows these systems to be controlled through goals (high-level user aims) and policies (lower-level system rules). Accent has been applied to the domains of: o Call Control: for telecommunications, particularly call control in Internet telephony o Home Care: for home automation and telecare, particularly for domestic appliances... -
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CSBB-v2.1 [CSBB-v3.0 is now available]
Computational Suite For Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and... -
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux,... -
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owfs and owhttpd
Project moved to https://github.com/owfs/owfs/
Please note that OWFS source code, and all Issue/Tickets/merge requests have now been moved to https://github.com/owfs/owfs/. Developer mailing lists will still be kept at Sourceforge. ---- OWFS -- 1-Wire file system. Use the Dallas 1-Wire and iButton chips with standard filesystem commands. Create temperature loggers. Monitor everything. OWHTTPD -- same system, only used as a light weight web server. -
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CSBB-v2.0
Computational Suite for Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and... -
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ViralFusionSeq [VFS]
Accurately discover viral integration events and fusion transcripts
...VFS combines soft-clipping information, read-pair analysis, and targeted de novo assembly to discover and annotate viral-human fusion events. A simple yet effective empirical statistical model is used to evaluate the quality of fusion breakpoints. Minimal user defined parameters are required. Source code with user manual and installation guide of VFS is available at sourceforge's "Files" section. Citation: http://www.ncbi.nlm.nih.gov/pubmed/
