Search Results for "data entry program"
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Showing 23 open source projects for "data entry program"
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AtomProbeLab
Matlab-based analysis of Atom Probe Data
...v=cyrLHCzZwuw For details of the maximum likelihood method used to solve peak overlaps see the following papers: https://doi.org/10.1017/S1431927616012782 and https://doi.org/10.1017/S1431927618016276 for the quantification of the uncertainty. If you are looking for Dan Haley's "weights" program, go here https://sourceforge.net/projects/apttools/files/extras/ -
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later... -
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Virtual Reflectometer
Simulates basic reflectometer scans with X ray tracing.
...It's not necessary to have Matlab installed on your computer if you want to use the standalone app (Download button). You can find a documentation in the wiki tab. The program is freshly released. So feedback is very welcome in order to improve it. You can write a discussion entry in the wiki tab or write me a mail to elias.hils@uni.kn -
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coDDMaker
distributions and co-distribution 2D signal analysis
coDDMaker is a MATLAB® App Designer's software program for the guided analysis of the distributions and co-distribution of marker pairs in 2D image. -
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ebfformat
An Efficient Binary data Format
...It is also designed to simplify the programming of input output routines in different programming languages. In a nutshell an EBF file is a collection of data objects. Each data object is specified by a unique name and a single file can have multiple data objects. Each data object is preceded by a meta-data or header which describes the binary data associated with it. Among other things, this header allows the files to be portable across systems with different endianess. -
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UmUTracker
A MATLAB program for 2D particle tracking or 3D DHM based tracking.
...Please visit our homepage for more information: http://www.physics.umu.se/english/research/biological-physics/the-biophysics-and-biophotonics-group/ *Please cite our work using the following information: Zhang, H., T. Stangner, K. Wiklund, A. Rodriguez, and M. Andersson. 2017. UmUTracker: A versatile MATLAB program for automated particle tracking of 2D light microscopy or 3D digital holography data. Comput. Phys. Commun. 219: 390–399. -
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PSIworx
Data processing for the PSI fluorometer
PSIworxR (R) and PSIworx (MATLAB) are a collection of functions and scripts to analyze data from the PSI SuperHead Fast Fluorometer series (www.psi.cz). These fluorometers are used in limnology and oceanography research communities. The program retrieves parameters from single turnover induction and relaxation. Results are returned as text files and PDF figures. -
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This project houses software to analyze data acquired from electrophysiology experiments. Currently, we have an Octave/MATLAB program to analyze electroneurogram traces of coupled oscillators, and a Perl library for the analysis of voltage trace data
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MS2Browser
LC-MS/MS data browser designed for siderophore analysis
...NOTE: The program is written for personal use to assist siderophore analysis using high-resolution LC-MS/MS data. Please contact me if you have any questions about its use, bugs, etc. -
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GUItars
GUItars is designed for the analysis of high throughput RNAi data.
Please refer to the original article published in PLOS ONE at http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0049386. GUItars's user-friendly graphical interface enables rapid analysis of RNAi and small molecule screens. GUItars uses SSMD for hit selection, which is preferred for its ability to diminish sample size effects and the false hit rate, making it superior to other widely used HTS analysis methods. The program can handle the analysis for screens without... -
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GoIFISH
for the semi-automated analysis of IFISH images
GoIFISH has been developed for the analysis of IFISH (Immunofluorescence + Fluorescence in situ Hybridisation) images, performing nuclear, membrane and spot detection. Users can manually edit segmentation results, perform background adjustments, construct heatmaps, topology maps, and perform cell classification. All results can be exported for further analysis. GoIFISH has been developed in MATLAB, however binaries are provided to run the program outside of the MATLAB environment.... -
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nail_systems_biology
NAIL is a toolset for network analysis in the life sciences
...NAIL includes methods for creating networks, analysing and comparing networks, and for visualising or presenting the results. These methods are designed as self-contained platform-independent components which can be called either from another program, or from a command line. Modelling biological systems as networks (graphs) is becoming a common approach in the life sciences. However, different algorithms typically use different input and output data types, are implemented using different technologies, and are demonstrated by application to different biological problems. ... -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or... -
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pymatlab
A pythonic interface to MATLAB
...Pymatlab makes it easier for users to integrate a project with a large MATLAB codebase into python scripts by using MATLAB scripts as a part of the python program. The basic functionality of this package is to send data from Python to MATLAB's workspace to be able to run Matlab function on the data. After processing you retrieve back data to python. This enables you to process data with Mathlab's built in functions, toolboxes or Matlab-scripts. ... -
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SPE Toolbox
MatLab functions for reading WinView/WinSpec .spe files
This toolbox is a collection of MatLab functions for reading WinView/WinSpec files (.spe extension) directly to MatLab. It provides functions for reading full header from file into a structure, reading frames into matrices, and reading pixel values across all frames. You can use these functions to analyse and process experiment data stored in .spe files in MatLab, and to write functions to export .spe files to animated GIFs for use in presentations. Also includes simple MatLab application... -
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Systems Glycobiology
Glycosylation Network Analysis Toolbox (GNAT)
...The original GNAT package (file GNAT.zip) provides functions for reading, writing, manipulation, visualization and simulation of glycan structures and glycosylation reaction networks (citation [1]). The second version of this software (GNATv2beta.zip) upgrades the original GNAT program with additional features that are geared towards incorporating glycan-structure experimental data into the simulation environment. For information about GNAT installation and usage, please see the GettingStarted.pdf file enclosed in the package. To cite GNAT: [1] Gang Liu, Apurv Puri and Sriram Neelamegham, Glycosylation Network Analysis Toolbox (GNAT): a MATLAB based environment for systems glycobiology, Bioinformatics 2013 29: 404-406 -
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NacaFoil
Matlab based GUI to plot and generate data points for NACA airfoils.
The standalone GUI plots and generates data points for four and five digit NACA Foils. Data points can be extracted as text, DAT or AUTO-CAD script files for convenient CAD modelling of 2D wing sections. Features of the program include the ability to specify cosine or linear spacing of data points, specifying reflex to the airfoil and choosing the trailing edge to be either open or closed. -
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LAVA for AFM
Lloyd's Algorithm-based Volumetric Analysis for AFM Images
This MATLAB-based program enables analysis of AFM images. In particular, it allows the user to measure the volume of all distinguishable features in an image and to isolate and sort those particles. As the name implies, LAVA uses Lloyd's Algorithm, also known as k-means sorting, to identify a small set of volumes representative of the actual distribution of particle in the image. Although developed for determining feature volume, LAVA is also completely compatible with other types of... -
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gvpp - Velocity Prediction Program
VPP - Velocity Prediction Program
VPP - Velocity Prediction Program - a Matlab library for sailing boat performance simulation. Based on DSYHS or user provided data. ###### A python version is currently under development and available upon request, please contact me at gianmail+gvpp@gmail.com ###### The new beta version replaces the previous alpha version after some bugs fixing and enhancements in the postprocessing output. -
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C2Mat is a simple wrapper library that allows OpenCV data structures to be transferred between C++ and Matlab. It lets a program combine the speed of OpenCV with the power of Matlab.
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This toolkit allows complete control of a microscopy setup from Labview, Matlab, Scilab, Python, .Net, VB, IgorPro, Mathematica and more. Included is a standalone program for image acquisition and scripting control of a scientific microscope.
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"Voxel Surface" is a MATLAB program that creates exact surfaces from 3-D voxel data such as from MRI and CT Scan. It replaces MATLAB isosurface, isocap and isonormals functions, which have several deficiencies. See README file and Gallery pictures.
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BrOxy is an open-source program used to analyse haemodynamic brain oxygenation from near-infrared spectroscopy data. It covers data import/export, filtering, correlation and multi-variate regression analysis, visualisation...
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