Showing 9 open source projects for "icmp data modification"

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  • 1
    The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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    Downloads: 20 This Week
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  • 2
    QUCAS-Quantum-Cosmology-Integration

    QUCAS-Quantum-Cosmology-Integration

    After 4/15/26 this project will be archived as 9 pipelines are consoli

    Quantum-Corrected Cosmological Perturbation Solver Live TRY https://huggingface.co/spaces/QCAUS/QCAUS or Beta https://huggingface.co/spaces/QCAUS/QCAUS License: Dual 🔬 Overview A complete computational framework for cosmological perturbation theory with first-principles quantum corrections. This package implements: Quantum-corrected Mukhanov-Sasaki equations with backreaction from quantum fields Full Boltzmann integration with quantum scattering terms Tensor...
    Downloads: 1 This Week
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  • 3

    ModST

    A tool to search post-translational modifications in a blind mode

    ModST (pronounced as modest) is a tool to search post-translational modifications (PTMs) in mass spectrometry data in an unrestrictive manner. It can search for hundreds of modification without any user provided information for variable modifications. Due to data level parallelization implemented through perl it is fast, portable and easy to use to identify and analyse PTMs in MS/MS data.
    Downloads: 0 This Week
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  • 4

    IOA AM code

    Implementation of the core routine for AM analysis from the IOA AMWG

    ...It is written in the Python language which is freely available. V1.5 is compiled for Windows (XP onwards). The responsibility for the correct implementation and application of the software or any modification thereof rests with the end user. It should not be taken as agreement from the IOA or the AMWG that any results produced by this code are recommended or agreed. The example software does not represent an analysis method and requires correct inputs parameters and data, and interpretation of the results. All users should have a suitable understanding of the IOA AMWG document on which this code is based. ...
    Downloads: 0 This Week
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  • 5
    CoverageAnalyzer

    CoverageAnalyzer

    RNA modification detection by RT signatures in deep sequencing data

    ...Common alignment viewers lack in specialized functionality, such as filtering, tailored visualization, differential analysis and export. Consequently, the community will profit from a platform seamlessly connecting detailed visual inspection of RT signatures and automated screening for modification candidates. CoverageAnalyzer was developed in response to the demand for a powerful inspection tool, running on all 3 OSes. With SAM standard as input and an intuitive GUI, even non-experts can accomplish a variety of tasks, from visualization of RNA Seq data, up to sophisticated modification analysis with significance-based candidate calling.
    Downloads: 0 This Week
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  • 6
    Ava: Testdata Xsl

    Ava: Testdata Xsl

    generates Testdata on base of excel: creates xml,excel,csv,html,sql,+

    this tool for test-data-generation receives an 'excel-sheet' as primary input. second important paramter is the 'number of test-records to produce'. The excel-data will be reused as long data is needed. This tool is hightly paramatrisazable by the use of 'xsl scripts'. data can be created, updated, modified and finally exported in a format of your choice Main Fuctions: (1) Generates Testdata (excel, xsl, xml) (2) Exports generated testdata in multiple formats (csv, excel, html,...
    Downloads: 0 This Week
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  • 7
    Knitter produces a 3-dimensional model of a knitting pattern. It supports KnitML, as well as a native language similar to that of traditional knitting patterns.
    Downloads: 5 This Week
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  • 8
    Weka-Parallel is a modification to Weka, created with the intention of being able to harness the power of Weka and the speed of parallel processing to be able to run a number of data mining and machine learning algorithms quickly.
    Downloads: 0 This Week
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  • 9
    FEVal, the Finite Element Evaluator written in Python, provides easy conversion for many Finite Element data formats (both binary and ascii). Mesh modification is very easy. Values of model results can be accessed given coordinates in physical space.
    Downloads: 0 This Week
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