Search Results for "file utility"
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Showing 25 open source projects for "file utility"
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OSRA is a utility designed to convert graphical representations of chemical structures and reactions, as they appear in journal articles, patent documents, textbooks, trade magazines etc., into SMILES or SD file format- a computer recognizable molecular structure You can find links to the binary executables here: https://sourceforge.net/p/osra/wiki/Download/
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jDiskMark
Java Disk Benchmark Utility
Cross platform disk benchmark utility written in Java. Measure your storage drive's read and write speeds by creating and accessing sample data files at your chosen location. Results are presented in an easy-to-understand graph, allowing clear characterization of storage device behavior. Customize a benchmark by adjusting the block sequence, sample size and block size. Runs are automatically saved allowing easy review and comparisons. Please try our new new windows installer: https... -
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System Verilog Parser IEEE 1800 LRM
IEEE LRM compliant System Verilog Parser in Java with Python, Tcl API
This parser has been developed to help users to implement their Verilog tool/utility on the top this library. It reads RTL and populates its internal data structures. There are APIs to extract the design information from the database, there are APIs to elaborate every element of the design along with basic expression evaluation capabilities. It has been bundled as an executable JAR file along with a sample application which reads a RTL file(s), elaborates and dumps it back to show the users... -
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Free VHDL Parser with Java, Python and T
IEEE VHDL-93 LRM supported parser implemented in Java, APIs Python/Tcl
... bundled as an executable JAR file along with an application which reads a RTL file(s), dumps the design units and the reverts those back. Please refer to the document for the details of the available APIs. You need Java JRE 1.6.x or above in order to use this utility. Feel free to contact the support team for any assistance. -
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The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
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ebfformat
An Efficient Binary data Format
EBF, which stands for Efficient Binary Format, is a binary file format for reading and writing binary data easily. Reading writing routines are currently available in C,C++,Fortran,Java, Python, IDL, MATLAB. A program called ebftkpy which has a set of utility functions to work with the .ebf files , e.g., viewing the contents and getting a summary, is also provided. The EBF specification is designed to be concise and easy to understand to make it easier for others to write their own code... -
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Jacksum
a free cross platform checksum utility, supports 58+ hash algorithms
Development of this project has been moved to https://github.com/jonelo/jacksum. This site has been left for historical purposes ONLY, you find older Jacksum versions here. Please visit the GitHub site for current development. Jacksum 1.7.0 is a platform independent checksum utility (written entirely in Java) for computing and verifying (integrity check) checksums, CRC and hashes (fingerprints). It supports 58 popular hash algorithms and a lot of unique features. -
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Quadric
Application for simple base-2 binary to base-4 DNA-code conversion
Quadric is an opensource file converter created by the Jomcraft Network development team. In it's core functionality this small utility can transform base-2 binary files into base-4 DNA-coded human-legible ASCII-files. -
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selectseq
Get specific sequences from a FASTA or FASTQ file.
A command-line utility to manipulate biological sequences from a FASTA or FASTQ file. It can, given a list of identifiers, get only a subset of the sequences (or their complement, i.e., sequences NOT in the list). Can also get sequence number N only. Compressed sequences files are supported if readable by zcat. -
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mfsizes
Multi-FASTA sequence (DNA or protein) statistics calculator.
A simple command-line utility to calculate biological sequence (DNA or protein) sizes in a (multi) FASTA file. It gives averages, GC (or methionine) content, N50, N90, N95, number of N's, and total bases, and can also report by codon if requested. -
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EigenMS is a normalization method implemented in R (and older version in Matlab) available as a set of two functions that should be used in a sequence. Please download EigenMS.zip file (latest version). Latest version uploaded in October 2017 has a bugfix for single treatment group normalization. Rescaling has been omitted from 2015. EigenMS utilizes SVD to detect bias trends in the data and eliminates them. EigenMS eliminates effects from known and unknown factors and can...
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GAVS+
An open platform for the research of algorithmic game solving
GAVS+ (Game Arena Visualization and Synthesis, Plus!) is an open-source tool which enables to visualize a broad spectrum of algorithmic games used in verification and synthesis, and offers a standard interface with utility functions to establish connection with engineering practice. It is developed by Department of Informatics (Unit 6), TU München. The tool is mainly is served for research and educational purposes. The software is released under the GNU General Public License (v3... -
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iMSAT represents a full update of the vcf2MSAT program. This command line python program allows for a user to use the polymorphism data generated using SAM- and BAM-tools and a .fasta alignment file to search for polymorphic microsatellite markers (MSATs or STRs). By identifying polymorphic makers, rather than simple repeat regions as previous programs have done, iMSAT greatly increases the speed at which polymorphic MSATs that can be identified -- saving researchers precious time and money...
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mp3splt
utility to split mp3, ogg vorbis and FLAC files without decoding
mp3splt is a free utility to split mp3, ogg vorbis and FLAC files without decoding, selecting begin/end time; if file is an album, you can get splitpoints automatically from internet or a local cue, cddb file. It also splits Mp3Wrap and AlbumWrap archives. Supports splitting and trimming by silence detection. For mp3 files, both ID3v1 and ID3v2 are supported using original tags or user defined tags. -
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Average
Command-line calculator of basic statistics.
Average is a simple and fast command-line Perl utility for calculating basic statistics on a list of numbers (one number per line). It works as a traditional Unix filter and can be used as part of those greatly useful chains of piped commands. It calculates average (arithmetic mean), standard deviation, median, total sum, minimum and maximum values present, and shows the number of processed numbers. Entry can by a text file (any column can be specified, default is the first) or directly... -
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q pipeline manager
q: integrated platform for pipeline configuration and management
The q utility is a platform for creating and managing data analysis pipelines. It expands the value of your existing job scheduler - either Grid Engine or TORQUE PBS - through numerous functions that help you organize, submit, monitor, manage and share your informatics work. Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently... -
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AJT is a set of utility classes for Java for handling some bioinformatics data, graphics file export, GUI widgets, and classes that should long have been added to the official Java API.
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GComb
GComb is a gCode viewing tool with an interior focus
... Skeinforge 50-generated GCode files. The jar file in the package was compiled for use by Java versions 1.5 and greator but, its compatibility on different operating systems and utility for different printers and slicers than those it was written for is not assured. However, we coders did our best to make sure that our implementation would not depend on comments in GCode or slicer-specific details, so it should work given files generated by Slic3r and others as well as Skeinforge. -
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fw2csv
Convert data file from fixed width format table to CSV
Fixed width data files are probably the most annoying data to import into database. This utility allows user to insert user-defined column separators into user-defided positions of flat file table given in fixed-width format. I am using this utility to import astronomical catalogs provided as flat tables at CDS ftp-server into postgresql; Build: $ make all [cc={icc|gcc}] Install: $ make install [prefix=/path/to/your/bin/directory] Example of usage: $ gzip -dc table.dat.gz... -
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knowceans
Utility classes from maps to search engine to random samplers
Collection of several multi-purpose Java libraries. --- knowceans-tools = collection of Java utility classes. --- Highlights: --- org.knowceans.util: IndexQuickSort, TableList: apply order of one array/list to others +++ Vectors, ArrayUtils: array convenience +++ RandomSamplers, CokusRandom, ArmSampler, Densities: random sampling and distributions +++ Arguments: command line parser +++ StopWatch, Which, ExternalProcess: runtime stuff +++ ParallelFor: OpenMP workalike +++ PatternString... -
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Utility to convert PED genome file into RAW SNP format. Creates multiple files per person. Supports big files. The same conversion utility has been included into "aisconvert" toolkit, so this project is rather deprecated.
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A utility to extract meta-information (properties/comments) out of various file-types; e.g. HTML, PDF, RTF & various Office documents; OGG/MP3 files and JPEG/PNG/GIF images, which can be presented in various output formats (HTML, XML, LaTeX & plain t
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Java based utility which graphically displays NS1 NetStumbler Files. Allows importing of a background image/map. Quickly displays the contents of the NS1 file, displays strength/noise/SNR and allows access point selection.
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A Win32 version of the popular linux FILE utility. It uses the same magic file format to scan and identify file types, regular expressions are not currently supported, neither are big/little endian conversions. but im working on it. :-) This was effectiv
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