Search Results for "et"
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Showing 80 open source projects for "et"
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conducteo
conducteö - logiciel de calcul des ponts thermiques linéiques
conducteö est un logiciel de modélisation et de simulation des ponts thermiques linéiques, conforme à la RT 2012 et aux principales normes européennes concernant les ponts thermiques. -
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IRAMUTEQ : Interface de R pour les Analyses Multidimensionnelles de Textes et de Questionnaires. Logiciel de traitement de données pour des corpus texte ou de type individus/caractères. Permet notamment de réaliser des analyses de type "ALCESTE"
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TomoJ
ImageJ plugin to perform Electron Tomography
...Messaoudi C et al -
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Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
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HEALPix
Data Analysis, Simulations and Visualization on the Sphere
Software for pixelization, hierarchical indexation, synthesis, analysis, and visualization of data on the sphere. Please acknowledge HEALPix by quoting the web page http://healpix.sourceforge.net (or https://healpix.sourceforge.io) and publication: K.M. Gorski et al., 2005, Ap.J., 622, p.759 Full software documentation available at https://healpix.sourceforge.io/documentation.php Wiki Pages: https://sourceforge.net/p/healpix/wiki/Home Exchanging Data with HEALPix (in FITS files): https://sourceforge.net/p/healpix/wiki/Exchanging%20Data%20with%20HEALPix/ GDL and FL users should read https://sourceforge.net/p/healpix/wiki/HEALPix%20and%20GDL/ -
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SPPAS
SPPAS - the automatic annotation and analyses of speech
SPPAS is a scientific computer software package written and maintained by Brigitte Bigi of the Laboratoire Parole et Langage, in Aix-en-Provence, France. Available for free, with open source code, there is simply no other package for linguists to simple use in the automatic annotations of speech, the analyses of any kind of annotated data and the conversion of annotated files. SPPAS is able to produce automatically speech annotations from a recorded speech sound and its orthographic transcription. ... -
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incertR
Incertitudes de Mesures de la Qualité de l'Air (Gaz et Particules)
Ensemble de fonctions permettant, à partir d'une base de données contenant les paramètres analyseurs, de réaliser les calculs d'incertitudes sur les mesures automatiques agrégrées de qualité de l'air. -
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Hyperspectral data analysis in R
Handling and basic analysis of hyperspectral data in R
The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal. -
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CPAT
RNA coding potential assessment tool
Using RNA-seq, tens of thousands of novel transcripts and isoforms have been identified (Djebali, et al Nature, 2012 , Carbili et al, Gene & Development, 2011) The discovery of these hidden transcriptome rejuvenate the need of distinguishing coding and noncoding RNA. However, Most previous coding potential prediction methods heavily rely on alignment, either pairwise alignment to search for protein evidence or multiple alignments to calculate phylogenetic conservation score (such as CPC , PhyloCSF and RNACode ). ... -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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NLIGA
Open source Matlab code for nonlinear isogeometric analysis
...References: [1] Xiaoxiao Du, Gang Zhao, Wei Wang, Mayi Guo, Ran Zhang, and Jiaming Yang. NLIGA: A MATLAB framework for nonlinear isogeometric analysis. Computer Aided Geometric Design, 2020, 80:101869. [2] Xiaoxiao Du, et al. Numerical implementation for isogeometric analysis of thin-walled structures based on a Bézier extraction framework: nligaStruct. Thin-Walled Structures, 2022,180:109844 -
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PINCIS
PINCIS.pl is a Perl bioinf. script to analyze PICS data
PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be concurrently used to generate cleavage specificity visualizations like the iceLogo (https://iomics.ugent.be/icelogoserver/create). -
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XIVO
X Inertial-aided Visual Odometry
XIVO is an open-source repository for visual-inertial odometry/mapping. It is a simplified version of Corvis [Jones et al.,Tsotsos et al.], designed for pedagogical purposes, and incorporates odometry (relative motion of the sensor platform), local mapping (pose relative to a reference frame of the oldest visible features), and global mapping (pose relative to a global frame, including loop-closure and global re-localization, this feature, present in Corvis, is not yet incorporated in XIVO). ... -
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Relative Overestimation VOP
VOP compression for MRI with overestimation control
...For better compression and speed use these: ***** https://sourceforge.net/projects/enhanced-sar-compression/ Virtual Observation Points SAR compression. Contains multiple Algorithms: Compression according to Eichfelder et al. and Lee et al. The Lee algorithm is enhanced by including overestimation control to reduce maximum relative overestimation. All algorithms are implemented in Matlab and were optimized for enhanced speed. Needs Matlab R2016b at least. Prefer R2018b or newer. ***** This work is outdated and is here for reference purpose, only. ***** If you are looking for improved SAR-compression algorithms, visit: https://sourceforge.net/projects/enhanced-sar-compression/ -
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gsasnp2
PubMed ID: 29562348 / DOI: 10.1093/nar/gky175
* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2", Nucleic Acids Research, Vol. 46(10), e60(2018)... -
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NOVA
Analysis and visualization of complexome profiling data.
...Many additional functions like zooming, searching for proteins, image export, and automatic file format recognition support intuitive handling for biologists. Giese, et al. NOVA: a software to analyze complexome profiling data. Bioinformatics, 2015, 31(3): 440-441 -
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JavoueJapasse_gl02
LOGICIEL D'ANALYSE D'EMAILS
Vous souhaitez analyser un programme permettant d'analyser simplement et efficacement tous vos emails ? Bienvenue chez JavoueJapasse ! Le cabinet de conseil UIConsult souhaite se doter d'un outil d'aide à l'analyse des communications et des expertises à l'intérieur de ses équipes de collaborateurs. L'enjeu est pour les responsables de secteur de pouvoir produire un rapport d'analyse des échanges par emails des collaborateurs, appelé "RCom". -
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RELEASE NOTE: Get raxmlGUI 2.0 at the NEW PROJECT LOCATION: https://antonellilab.github.io/raxmlGUI/ raxmlGUI is a graphical user interface to RAxML, one of the most popular and widely used software for phylogenetic inference using maximum likelihood. A userfriendly graphical front-end for phylogenetic analyses using RAxML (Stamatakis, 2006). Please cite: Silvestro, Michalak (2012) - raxmlGUI: a graphical front-end for RAxML. Organisms Diversity and Evolution 12, 335-337. DOI:...
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dupost
Dual Porosity Stokes model implemented with FEniCS
...Hou, "A Data Assimilation Enabled Model for Coupling Dual Porosity Flow with Free Flow," 2018 17th International Symposium on Distributed Computing and Applications for Business Engineering and Science (DCABES), Wuxi, 2018, pp. 304-307. doi: 10.1109/DCABES.2018.00085 2. Hu X., Douglas C.C. (2019) An Implementation of a Coupled Dual-Porosity-Stokes Model with FEniCS. In: Rodrigues J. et al. (eds) Computational Science – ICCS 2019. ICCS 2019. Lecture Notes in Computer Science, vol 11539. Springer, Cham -
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Hammurabi Code
Astrophysical magnetic fields simulator
...It is a modular C++ framework into which you can add your own models easily and then use it to perform the line-of-sight integration to compute the observables. See the wiki for installation and usage information. Please cite the original Waelkens et al. (2009) paper if you use hammurabi. This version of Hammurabi is deprecated and is no longer being supported. A new and improved version of Hammurabi (dubbed 'X') is available at : https://bitbucket.org/hammurabicode/hamx -
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Nelder Plot Designer
A Computer-aided Tool for Nelder Plot Design
...This design eliminates the need for separate experimental plots for each tree density. The difficulties with Nelder plot design is their uncommon layout and complex parameterization (Parrott et al. 2012). This computer-aided tool for designing the Nelder plot can be very useful for the practical implementation of this experimental design.\r\n\r\nReferences\r\nNelder JA (1962) New kinds of systematic designs for spacing experiments. Biometrics 283–307\r\nParrott DL, Brinks JS, Lhotka JM (2012) Designing Nelder wheel plots for tree density experiments. ... -
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...HTDP provides quick filtering functionality and can process data consisting of single or multiple input files. Citation: Madanecki P, Bałut M, Buckley PG, Ochocka JR, Bartoszewski R, Crossman DK, et al. (2018) High-Throughput Tabular Data Processor – Platform independent graphical tool for processing large data sets. PLoS ONE 13(2): e0192858. https://doi.org/10.1371/journal.pone.0192858
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BEMoDA
Dissolution profile comparison Model Dependent-Independent Approach
Dissolution profile comparison (Biowaiver aid) Model Dependent-Independent Approach scripts for in-vitro dissolution profile comparison as proposed by Sathe et al. in 1996 (Sathe PM, Tsong Y, Shah VP. In-vitro dissolution profile comparison: statistics and analysis, model dependent approach. Pharm Res. 1996 Dec;13(12):1799-803) and Tsong et al. in 1996 (Tsong Y, Hammerstrom T, Sathe P, Shah VP. (1996) Statistical Assessment of Mean Differences between Two Dissolution Data Sets, Drug Info. ... -
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isiKnock
In silico knockouts for signaling pathways
...The perturbation of biological systems can reveal the complicated interplay and dependencies of pathway components. isiKnock is a software to automatically conduct and visualize in silico knockouts for signaling pathways (Hannig et al. 2019). isiKnock predicts the knockout behavior based on the calculation of signal flows at steady state. For an explanation of the concept of in silico knockouts, we refer to Scheidel et al. 2016 and Amstein et al. 2017. Hannig et al. (2019) isiKnock: in silico knockouts in signaling pathways, Bioinformatics, 35(5), 892–894 Amstein et al. (2017) Manatee invariants reveal functional pathways in signaling networks. ... -
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CRISPR-offinder-v1-2
A CRISPR tool for user-defined protospacer adjacent motif
CRISPR/Cas system undoubtedly holds great potential for genome editing. Target site cleavage by CRISPR technology requires a protospacer adjacent motif (PAM) immediately downstream or upstream of the protospacer element to which the sgRNA binds. However, Cas9 from different types of bacteria or variant recognizes different PAM sequences. To meet the needs of different CRISPR system with specific and efficient sgRNA design, CRISPR-offinder was developed. Given an input FASTA file of the... -
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Crosshub
Multi-way analysis of The Cancer Genome Atlas (TCGA) project datasets
Crosshub enables multi-way analysis of RNA-Seq, miRNA-Seq and methylome data of The Cancer Genome Atlas (TCGA) project: 1. differential expression analysis (genes, alternative transcripts and miRNA) 2. regulatory miRNA prediction (TargetScan, DIANA microT, mirSVR, PicTar, miRTarBase + co-expression) 3. regulatory TF prediction (ENCODE ChIP-Seq + co-expression) 4. methylation profiling analysis 5. RNA-Seq vs. clinical (TNM, stage, follow-up) correlation analysis Generates Excel summaries. For details, see the manual or article G.S. Krasnov et al. NAR 2016, Pubmed ID: 26773058
