Search Results for "sql command line" - Page 6
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Showing 1359 open source projects for "sql command line"
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Gap.app
Gap.app is a frontend and distribution for GAP on macOS
A native Macintosh front-end and distribution for the GAP computer algebra system. It provides a Mac-like command editing environment and save/load, while making available graphical libraries compatible with xgap. -
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MANTI
MANTI - Mastering Advanced N-Termini Interpretation
MANTI is a one-stop shop N-termini annotation & evaluation solution. MANTI was previously (un)known as muda.pl ahead of v3.7, the project was renamed to MANTI.pl with v3.7 on 2019-06-24. It congregates information from different MaxQuant or DiaNN/MSFragger output files into a master file suitable explicitly for protein neo-termini analyses. The central anchor for the data congregation is the modificationSpecificPeptides.txt or diann-output.pr_matrix.tsv file - additional data is inferred... -
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UrJTAG aims to create an enhanced, modern tool for communicating over JTAG with flash chips, CPUs, and many more. It is a descendant of the popular openwince JTAG tools with a lot of additional features and enhancements.
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Qgama
Adjustment of local surveying networks, binary builds for Windows
...Qgama is a Qt based user interface for GNU Gama adjustment of geodetic networks in which XML input is complemented with a database. The most simple case is Sqlite3 file database, which does not need any special knowledge from the user. http://www.gnu.org/software/gama/qgama Command line program gama-local is distributed with Qgama in folder bin. -
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XMD is a program for performing molecular dynamic simulations on metals and some ceramics materials at the atomic scale. It models atomic energies and dynamics using user defined pair potentialsl, EAM potentials and some hard coded potentials.
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A set of cross-platform tools for connecting via TCP/IP to the VOEvent transient astronomy alert network. Tools include a receiver/broker, a sender/publishing tool, and a VOEvent message checker. Runs on Linux, Mac OS X and Microsoft Windows.
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opbdp
opbdp (non-linear) pseudo-Boolean optimization
opbdp is an implementation in C++ of an implicit enumeration algorithm for solving (non)linear 0-1 (or pseudo-Boolean) optimization problems with integer coefficients. A research report describing the techniques used in opbdp is included. -
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...In a nutshell, Mesh2HRTF simply reads geometrical data, calculates the corresponding sound field and outputs HRTFs. To support multiple computer platforms, the concept of Mesh2HRTF is to focus on a command-line tool, which forms the numerical core, i.e., an implementation of the 3-dimensional Burton-Miller collocation BEM coupled with the multi-level fast multipole method (ML-FMM), and to provide add-ons for existing cross-platform applications for the preprocessing of geometrical data and for the visualization of results.
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QWait (theme park visitor simulator)
Simple theme park visitor simulator
Inspired by a youtube video, I thought I'd have a go at building a theme park visitor simulator. A command-line driven tool that can output a range of CSV data. A couple of Excel templates are included so you can quickly see some graphs. I've included data for four famous theme parks, and one generic test park. I'll add more as I get access to real-world data. What's included: Visitor will travel from ride to ride at a reasonably realistic speed. -
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MiModD
Mutation Identification in Model Organism Genomes using Desktop PCs
MiModD is a software package for genomic variant identification from next-generation sequencing (NGS) data with optimized usage of system resources and a user-friendly interface. For most model organism genomes it lets the user carry out a complete analysis from unaligned genomic NGS read data to an annotated list of variants on a regular Desktop PC within a few hours. Its user-interface is beginner-friendly and designed to encourage geneticists to analyze NGS data themselves without the... -
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Design PCR primers from DNA sequence. Widely used (190k Google hits for "primer3"). From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it. C&perl. Developers/testers/documenters needed.
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MasterSim
A co-simulation master for Functional Mockup Units (FMI 1.0 and 2.0).
A simulation master library, command line utility and user interface for simulating coupled systems of Functional Mock-up Units (FMU) for CoSimulation with FMI version 1 and 2. The master implements several modern algorithms, including Gauss-Seidel, Newton iteration, variable time stepping and step size control. -
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Argos Translate
Open-source offline translation library written in Python
Argos Translate uses OpenNMT for translations and can be used as either a Python library, command-line, or GUI application. Argos Translate supports installing language model packages which are zip archives with a ".argosmodel" extension containing the data needed for translation. LibreTranslate is an API and web-app built on top of Argos Translate. Argos Translate also manages automatically pivoting through intermediate languages to translate between languages that don't have a direct translation between them installed. ... -
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adcptools
Set of functions to process acoustic Doppler current profiler data
adcptools is a set of Matlab functions to post-process acoustic Doppler current profiler data. It consists of several low-level function to read out data files and several functions to process data from repeat transect measurements, moored turbulence measurements and horizontal ADCP deployments. -
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MITRE Annotation Toolkit
A toolkit for managing and manipulating text annotations
...Annotation is a process, used mostly by researchers in natural language processing, of enhancing documents with information about the various phrase types the documents contain. MAT supports both UI interaction and command-line interaction, and provides various levels of control over the overall annotation process. It can be customized for specific tasks (e.g., named entity identification, de-identification of medical records). The goal of MAT is not to help you configure your training engine (in the default case, the Carafe CRF system) to achieve the best possible performance on your data. ... -
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ADaMSoft
Open Source and data mining software
ADaMSoft is a free and Open Source Data Mining software developed in Java. It contains data management methods and it can create ready to use reports. It can read data from several sources and it can write the results in different formats. -
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'isotope' is a small command-line utility to calculate the isotope pattern for a given chemical formula. It allows to run calculations interactively, in batch mode, via the command line, or (using a webserver) via a web interface.
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HostDesigner
General purpose de novo molecular design software
Although many potential applications exist in chemistry and material science, software to allow the general application of de novo structure-based design methods in supramolecular chemistry was non-existent. To address this limitation we created HostDesigner, a code that builds and evaluates millions of molecules in minutes. This command line executable builds 3D molecular structures by covalently connecting user-defined input fragments with pre-computed hydrocarbon fragments from a library. The results are ranked with respect to desired geometric constraints defined by the user. See the User's Manual for further details including a list of literature citations for example applications. ... -
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hr ("High Resolution") is a small command-line utility to calculate possible elemental compositions for a given mass. It allows to run calculations interactively, in batch mode, via the command line, or (using a webserver) via a web interface.
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ASGARD
Metabolic reconstruction from DNA or protein sequences.
ASGARD is software for metabolic pathway reconstruction, but it can also generate other types of biological sequence annotation (EC and GO numbers, BLAST reports). This program is intended to be run in UNIX-like systems, and supports SGE or PBS. -
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MesoRD is a stochastic and deterministic simulator of coupled chemical reactions and diffusions in space.
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bruread is a program to read and display NMR data in the Bruker XWIN-NMR format. The program has a command-line interface and a graphic display based on gnuplot. - Note that this is only an NMR spectrum *viewer*, not a full-fledged data evaluation suite
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Allelome.PRO
A pipeline to define allele-specific genomic features
Detecting allelic biases from high-throughput sequencing data requires an approach that maximises sensitivity while minimizing false positives. Here we present Allelome.PRO, an automated userfriendly bioinformatics pipeline, which uses high-throughput sequencing data from reciprocal crosses of two genetically distinct mouse strains to detect allele-specific expression and chromatin modifications. Allelome.PRO extends approaches used in previous studies that exclusively... -
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m6811dis
M6811 Code-Seeking Disassembler
The M6811 Code-Seeking Disassembler is a command-line tool that lets you enter known starting vectors for a given code image for the 6811 micro. It will disassemble the code and follow through branches to assist in the separation of code and data. Its companion Fuzzy Function Analyzer uses DNA Sequence Alignment Algorithms to locate similar code in multiple binaries, facilitating reverse-engineering. -
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This is an application generator for conflation algorithms in perl language. This system supports generation perl source code for a stemmer from a rule file, running a stemmer which is supported by the system, parsing a corpus file.
