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Goldify is a set of tools that allow automated addition of links into electronic documents. Its main purpose is to allow such addition of links into documents that wish to link to the IUPAC GoldBook (http://goldbook.iupac.org).
SUBLEQ is a machine language in which there are no opcodes, the only operation available is substract and branch if negative or zero. This project offers a virtual machine for SUBLEQ programs. The included compiler allows you to write SUBLEQ more easy.
s2vhdl extracts structural information from SystemC HDL programs. The output is in VHDL code and graphical diagrams. GCC compiler is used as a C++ frontend.
This is a Perl module for doing snp analysis based on shotgun sequencing reads and a reference genome sequence. Its primary input is the cigar alignment format outputted from ssaha2.
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Tool kit for moving KML formatted Geospatial data into and out of other GIS packages such as ESRI ArcGIS, PostGIS, etc Supports reading and writing Google Earth files via Python and other GIS packages.
This is a simple C# commandline calculator. It evaluates arithmetic expressions and functions. Easy to extend. Features include factorials, powers, brackets, bracket normalization, polish notation, factorization, fields, and advanced error reporting.
A C-based bluetooth scanner. Uses multiple dongles to optimise the discovery process. Parameters can be adapted at the commandline. Can use some dongles to discover devices, and other dongles to inquire their names. Optimised for scanning crowds.
Tool for retrieve, via Web, statistics from bug trackers in free/open source software projects. The aim of this software is to provide researchers with statistics about bug-fixing process in a project
A family of programs for building coarse-grained models (eg. of macromolecules), manipulating them (geometrical transformations and more) and calculating their X-ray scattering patterns (1D and 2D too). Uses PVM for parallelization.
With OSM Parser it is possible to process OpenStreetMap geodata for various purposes. For example, it can be used to extract streets or other OSM elements for user defined regions to generate a street directory.
Project is closed, since useful alternatives exist. See http://toeholds.wordpress.com/2010/03/23/writing-chemistry-with-latex-33/ for an example. With write18 and openbabel, you probably can do whatever you want.
NoBlast provides a new extended user friendly csv output format and offers an option to correct the statistics when split databases are used for NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn and Tblastx).
The Simple Versatile Plotting (SVP) tools create camera-ready plots of performance analysis data gathered from high performance computing (HPC) applications.
mzSquash is a compression tool for mzML files, an XML-based standard developed by HUPO PSI (http://www.psidev.info) for spectrometer output. All development has ceased. The tool may be useful educationally, but is not a recommended utility.
Utility to translate "dvorcodes" (Dvorak keycap-encoded phrases) into their actual key values. For instance the dvorcode for "password" is "laoo,rpe". Use this tool to discover your dvorcode passwords when you must enter them on a QWERTY keyboard.
JColorGrid is a Java application for graphical 2D data exploration and rendering of colorgrids, a generalization of the popular heat-map representation. The software exists as a command-line application, a graphical viewer, and an API for development.
VCAKE is a genetic sequence assembler capable of assembling millions of small nucleotide reads even in the presence of sequencing error. This software is currently geared towards de novo assembly of Illumina's Solexa Sequencing data.
RmiR is an R package for the analysis of microRNA and gene expression microarrays.
The package is designed to coupling microRNA and gene expression data, using different databases, like TargetScan, mirBase, picTar,TarBase and others...
Ariel is an implementation of the quadratic sieve in Java. Ariel is simple to use and requires minimal knowledge of the sieve's mechanisms for factorizations.
The gsuffix library implements serveral algorithms used for enumerative string searches. It incorporates the suffix tree and suffix array data structures as well as some other methods.
JIM is an Image Mosaicker developed at ATIS lab.
It allows you to create mosaics from a set of image. If we use it for professional aerial maps, it should also be suitable for holiday's panoramas.