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Showing 147 open source projects for "proxy http https"
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AntibiogramJ
AntibiogramJ is a Java program for the reading of antibiogram-images
...Pascual, C. Torres, and M. Zarazaga. AntibiogramJ: a Tool for Analysing Images from Disk Diffusion Tests. Computer Methods and Programs in Biomedicine 143:159-169. 2017. DOI: http://dx.doi.org/10.1016/j.cmpb.2017.03.010 You can see more information about AntibiogramJ in https://sourceforge.net/p/antibiogramj/wiki/Home/ Several videos explaining the use of AntibiogramJ are available in https://sourceforge.net/p/antibiogramj/wiki/Videos/ AntibiogramJ includes now the EUCAST v.9.0. Please address any question or comment to joheras at gmail.com -
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The DREAM Toolbox
The DREAM toolbox is a free open source acoustic field simulation tool
...The DREAM toolbox enables analysis of beam-steering, beam-focusing, and apodization for wideband (pulse) excitation both in near and far fields. The code in the svn repository # svn co http://svn.code.sf.net/p/dreamtoolbox/code/trunk dream is not used actively anymore and is kept here for referecne only. The development code has moved to git on: https://github.com/frli8848/DREAM -
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openCONFIGURATOR
An Open Source POWERLINK network configuration toolkit
openCONFIGURATOR is an open-source configuration framework for easy setup, configuration and maintenance of any POWERLINK (https://goo.gl/U9tjiy) network. It ideally complements openPOWERLINK, the open source POWERLINK protocol stack for master and slave. The project consists of a core library implementing the configuration algorithms and an eclipse plugin base user interface. For XDD tooling and validation support within eclipse please visit: https://goo.gl/NBytgg Please use the update site to install the plugin in your eclipse environment: http://sourceforge.net/projects/eclipse-plugin.openconf.p/files/update-site/ KNOWN ISSUE WITH THE UPDATE SITE DUE TO SOURCEFORGE ENCRYPTION POLICIES: https://goo.gl/kVr2ZZ Install via Eclipse marketplace: http://goo.gl/vweJ9h User Manual: https://goo.gl/viGd5P For Linux distributions with Boost 1.54.0 please use: https://goo.gl/hMRTss For Linux distributions with Boost 1.61.0 please use: https://goo.gl/ZSvW7C -
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OpenGrowth
OpenGrowth is a program which constructs de novo ligands for proteins.
OpenGrowth is a research program which grows new ligands in proteins by connecting small organic fragments. The details can be found in the original publication "OpenGrowth: an automated and rational algorithm for finding new protein ligands" (J. Med. Chem., http://dx.doi.org/10.1021/acs.jmedchem.5b00886). To use OpenGrowth, you will need OpenGrowth_1.0.zip and Resources_1.0.2.zip that can be found by clicking on the Files menu in the horizontal bar at the top (https://sourceforge.net/projects/opengrowth/files). OpenGrowthGUI, FOG2.0, and the 3Mer-Screen stand-alone can be found in OpenGrowth_1.0.zip. ... -
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JESUBOTs - FRC Team #5809
Rockhurst High School Robotics Team
http://www.rockhursths.edu -
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Ethernet POWERLINK XDD Tool Suite
Provides eclipse plugins for XDD edit, validation and OD generation.
The plugins include functionality to edit and check CN / MN XDD / XDC files against the DS311 V1.2.0 and the DS 301 1.3.0 specification. Another plugin enables the user to generate the object dictionary header file from an XDD / XDC file for the openPOWERLINK (https://goo.gl/Cg77Oi) implementation. Please note that the validation functionality works properly for Controlled and Managing Node XDD / XDC files. Please use the update site to install the plugin in your eclipse environment: http://sourceforge.net/projects/xddpluginsuite.openconf.p/files/update_site/ User Manual: https://goo.gl/hvtLAq XDD editor plugin user manual: https://goo.gl/Fo5pUQ Install via Eclipse marketplace: https://goo.gl/eAZAn9 Link to the openCONFIGURATOR parent project: https://sourceforge.net/projects/openconf/ -
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LTL3DRA
LTL to deterministic Rabin automata translator based on LTL3BA
...Strejček: Effective Translation of LTL to Deterministic Rabin Automata: Beyond the (F,G)-Fragment (2013) In 11th International Symposium on Automated Technology for Verification and Analysis (ATVA 2013) In order to compile LTL3DRA, the BuDDy library (http://sourceforge.net/projects/buddy/) is needed. Tested with buddy 2.4. The benchmark used in "Comparison of LTL to Deterministic Rabin Automata Translators" paper published on LPAR19 can be found in Files/LPAR19-benchmarks (https://sourceforge.net/projects/ltl3dra/files/LPAR19-benchmarks/). -
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...In the current status we have implemented a well founded reinforcement learning core in Java with many popular usecases, environments, policies and learners. Obtaining the teachingbox: FOR USERS: If you want to download the latest releases, please visit: http://search.maven.org/#search|ga|1|teachingbox FOR DEVELOPERS: 1) If you use Apache Maven, just add the following dependency to your pom.xml: <dependency> <groupId>org.sf.teachingbox</groupId> <artifactId>teachingbox-core</artifactId> <version>1.2.3</version> </dependency> 2) If you want to check out the most recent source-code: git clone https://git.code.sf.net/p/teachingbox/core teachingbox-core Documentation: https://sourceforge.net/p/teachingbox/documentation/HEAD/tree/trunk/manual/
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...PLoS ONE 13(2): e0192858. https://doi.org/10.1371/journal.pone.0192858
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The project development has been moved on GitHub https://github.com/pcb2gcode/pcb2gcode The GUI for pcb2gcode can be found here https://github.com/pcb2gcode/pcb2gcodeGUI pcb2gcode is a command-line tool for isolation, routing and drilling of PCBs that provides full support for both single- and double-sided boards. For more information, see http://sourceforge.net/apps/mediawiki/pcb2gcode/
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
...In default threshold 30X data (Phred scale score > 20), it could detect 92.21% heterozygous SNPs with 0.14% false positive rate Cytosine calling is not only based on reference context, so it could detect non-reference cytosine context. Google group for help: http://goo.gl/zL7Nj -
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DualTranscriptDiscovery
Transcript-discovery approach for gene feature delimitation by RNA-seq
http://bio.biologists.org/content/7/1/bio028498 https://www.ncbi.nlm.nih.gov/pubmed/?term=29183907 -
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FUMOLA - Functional Mock-up Laboratory
An FMI-based co-simulation framework.
FUMOLA is a co-simulation framework specifically designed to support the features offered by the FMI specification. It provides a flexible platform that allows to configure and execute co-simulation setups in an easy way. FUMOLA is developed on top of the Ptolemy II framework (https://ptolemy.eecs.berkeley.edu) and the FMI++ library (http://fmipp.sourceforge.net). The online documentation of FUMOLA is available here: https://sourceforge.net/p/fumola/wiki/Home/ -
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CalculiX Portable 4 Linux
CalculiX Portable
See here for newer version: https://youtu.be/mfvtWzbqNFw Portable 64-bit Linux CAE Applications to avoid Dependency hell 1) calculix portable 2) netgen opensource mesher (development) 3) dolfyn.net opensource CFD code (windows executables are included) 4) CDE: Automatically create portable Linux applications http://www.pgbovine.net/cde.html -
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EFO
The Experimental Factor Ontology describing experimental variables
*** Please note this repository is now deprecated as of January 2018. All EFO development and source code has been moved to https://github.com/EBISPOT/efo *** The Experimental Factor Ontology (EFO) available from http://www.ebi.ac.uk/efo is an application focused ontology modeling the experimental factors in ArrayExpress and constructing mappings to multiple existing domain specific ontologies. To submit new terms, features or report bugs please submit a ticket at the following: http://www.ebi.ac.uk/panda/jira/secure/CreateIssue!... -
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HermeneutiX
Your graphical tool for Syntactic/Semantic Structure Analysis of texts
...HermeneutiX is now part of SciToS (the scientific tool set). Starting with version 2.0.0, HermeneutiX can be found on GitHub. Please check out the release summary: https://github.com/scientific-tool-set/scitos/releases For an introduction, check out this video: https://youtu.be/uQjewyG0Ad8 PS: To run a Java application such as HermeneutiX (i.e. SciToS) you need a Java Runtime Environment (JRE). HermeneutiX is currently built to be compatible down to JRE version 6. You may download the current JRE here: http://www.java.com/en/download -
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freedomotic
Open IoT Framework
...Freedomotic can interact with well known standard building automation protocols as well as with "do it yourself" solutions. It treats the web, social networks and branded frontends as first class components of the system. [GITHUB REPOSITORY] https://github.com/freedomotic/freedomotic [USERS' MANUAL] http://freedomotic-user-manual.readthedocs.io/ [DEVELOPERS' MANUAL] http://freedomotic-developer-manual.readthedocs.io/ [INTERNATIONAL COMMUNITY] https://groups.google.com/forum/#!forum/freedom-domotics [ITALIAN COMMUNITY] https://groups.google.com/forum/#!forum/freedomotic-it [REPORT AN ISSUE] https://github.com/freedomotic/freedomotic/issues -
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Epidat
Statistical data analysis
Programa multiplataforma de libre distribución para el análisis estadístico y epidemiológico de datos. Free distribution cross-platform program for statistical and epidemiological analysis of data. Sitio web: http://www.sergas.es/Saude-publica/EPIDAT Souceforge: https://sourceforge.net/projects/epidat/ Wikipedia: https://es.wikipedia.org/wiki/Epidat -
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BUGS-R provides R / S-PLUS packages (http://www.r-project.org) for interface to WinBUGS and OpenBUGS programs. The project is no longer hosted in sourceforge, but on https://r-forge.r-project.org/projects/bugs-r
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Kinetic Model Builder
GUI for building, simulating and optimizing kinetic models.
A 3D graphical interface for building, simulating and optimizing Markov kinetic models in response to user defined time dependent stimuli. Models can be represented as either states and connecting transitions or interacting allosteric elements (see http://dx.doi.org/10.1085/jgp.201411183). Model parameters can be optimized by fitting model responses to user data. Optional user defined constraint equations for model parameters are parsed with EigenLab (https://github.com/marcel-goldschen-ohm/EigenLab). Convenient simulation and summarization across 2-dimensional sets of stimulus conditions makes constructing stimulus-response curves incredibly simple. ... -
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Elexis Praxisprogramm
An Eclipse RCP program for all aspects of a (Swiss) medical practice
An Eclipse RCP program for all aspects of a medical practice: electronic medical record (EMR), laboratory findings etc., as well as accounting, billing (swiss TARMED-System, other systems to be developped) and other daily work. A fully functional version may be downloaded via http://download.elexis.info/3.1.0. Users may optionally include a demo database to have a playground for experiments. See also http://wiki.elexis.info/Installation_Elexis_3.0_OpenSource Elexis 3.1.0 was released on May, 4 2017. At http://elexis-forum.ch/ users have a place to share their experiences with other peoples. Developers and anybody trying to compile Elexis from scratch should look at https://github.com/elexis/elexis-3-core/tree/master/ch.elexis.sdk The documentation is found under http://wiki.elexis.info/ -
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detectMITE
Detection of Miniature Inverted Repeat Transposable Elements
...PLoS ONE 9(11): e113349. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113349 [3] detectMITE user manual Please visit the Wiki page of this website. [4] detectMITE Q&A For Q&A, please visit the Blog page of this website. [5] Update history To see the update history, go to https://sourceforge.net/p/detectmite/wiki/UpdateHistory/ -
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Lib Hyper Math for GCC (C++)
Library Hyper Math for GCC (C++)
...The results are presented in radians. For results in degrees multiply 180/M_PI by radians or use function torad. For degrees multiply M_PI/180 or use todeg. For more libraries, go to: https://sourceforge.net/u/augustomanzano/profile. To see my curriculum vitae go to: http://lattes.cnpq.br/8184615061457853. Augusto Manzano http://www.manzano.pro.br -
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Lib Finance Math GCC (C++) Lotus 123
Library Finance Math for GCC (C++)
...The financial features of this library are based on the collection of finely-tuned features found in the old Lotus 1-2-3 spreadsheet software. For more libraries, go to: https://sourceforge.net/u/augustomanzano/profile. To see my curriculum vitae go to: http://lattes.cnpq.br/8184615061457853. Augusto Manzano http://www.manzano.pro.br -
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stellarics
Inverse Compton emission from heliospheres of sun and stars
...The software also includes general-purpose routines for inverse Compton scattering on a given electron spectrum, for example for interstellar or astrophysical source modelling. For further information see these publications: http://arxiv.org/abs/astro-ph/0607563, http://arxiv.org/abs/0801.2178, http://arxiv.org/abs/1104.2093, http://adsabs.harvard.edu/abs/2013NuPhS.239..266O and this conference presentation: https://confluence.slac.stanford.edu/download/attachments/130879399/poster_symposium_sun_2012.pdf and the corresponding conference paper http://arxiv.org/abs/1307.6798 2017 June 16: now available from gitlab https://gitlab.mpcdf.mpg.de/aws/stellarics which will be used for future develpments.
