Search Results for "sql command line" - Page 25
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Showing 1359 open source projects for "sql command line"
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Volterra-Wiener series Identification Toolbox. This tool lets the identification of nonlinear discrete causal systems that can be approximated with the Volterra-Wiener series. Please see NEW ADVANCE in Volterra series identification: https://sourceforge.net/projects/volterra20/?source=directory
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cnvHiTSeq
cnvHiTSeq is a set of tools for detecting CNVs using sequencing data.
cnvHiTSeq is a set of Java-based command-line tools for detecting Copy Number Variants (CNVs) using next-generation sequencing data. cnvHiTSeq uses standard BAM files as input. -
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BreakDancer-0.0.1 is a Perl package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads.
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The ASN.1 Compiler
Go to github.com/vlm/asn1c for the latest version.
This ASN.1 compiler turns ASN.1 specifications into C code. The asn1c is shipped together with conformant BER/DER/XER/PER codecs. The X.509, GSM TAP3, MEGACO, RRC and LDAP encoding and decoding examples are part of the source code distribution. NOTE: THE asn1c PROJECT HAS LARGELY MOVED TO GITHUB: http://github.com/vlm/asn1c -
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Various tools for creating annotated parallel corpora including pre-trained tagging and parsing models for various languages, sentence alignment tools and word alignment tools. Uplug also includes a web-based interface for interactive sentence and word alignment and scripts for indexing and querying parallel corpora using the Corpus Work Bench CWB. Download 'uplug-main' first and then add other packages.
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UM-OLSR is an OLSR (Optimized Link State Routing protocol) implementation for the ns2 network simulator.
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IRIS is an extensible reasoning engine for Datalog extended with function symbols, unsafe rules, negation, locally stratified or non-stratified programs, XML schema data types and a comprehensive and extensible set of built-in predicates.
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Starch CLD fit
Least-squares fit of amylopectin chain-length distribution
This FORTRAN program package finds the parameters involved in amylopectin chain-length distribution (CLD) biosynthesis by fitting experimental CLD data to a model which incorporates the underlying starch biosynthesis. The amylopectin CLD biosynthesis model used by this program is explained in the article “A Parameterized Model of Amylopectin Synthesis provides key insights into the Synthesis of Granular Starch”, by Alex Chi Wu, Matthew K. Morell and Robert G. Gilbert. The downloadable... -
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Circonspect is a bioinformatic tool to produce contig spectra, useful for the estimating viral diversity in metagenomes. It uses an external assembly program and a bootstrap technique to automate the generation of contig spectra and cross-contig spectra.
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SPiM2Eclipse
Eclipse plugin for Stochastic Pi Machine
...A web application Visual SPiM, and a destkop application SPiM Player. Both simulation tools require to be run on a Windows platform. Fortunately Microsoft has also released a command line version for Linux and Mac OS based on OCAML however this version will only output a CSV file for the simulation results. SPiM2Eclipse provides a bridge for those running SPiM from the command-line by allowing simulations to be completed by a single click, displaying an embedded plot of the results. Features: -As an Eclipse plugin you have all of the powerful features of Eclipse available to you. ... -
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PolyBoRi is implemented as a C++ library for Polynomials over Boolean Rings, which provides high-level data types for Boolean polynomials. A python-interface yields extensible algorithms for computing Groebner bases over Boolean Rings.
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Storyteller
TAL effectors DNA-binding site predictions
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MID Adjust
Prepare reads with no MIDs or variable length MIDs for analysis
Prepare reads for Pyrotagger or QIIME analysis Pyrotagger only accepts sequencing reads that have MID sequences (a.k.a barcodes, tags), and all of them must have the same length. When you have no MIDs, or variable-length MIDs, MID Adjust appends new MIDs or extends existing ones to satisfy Pyrotagger requirements. New features include the ability to generate fake quality scores and to parse and generate QIIME mapping files. -
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MCC-LIDAR
Multiscale Curvature Classification for LIDAR Data
MCC-LIDAR is a C++ application for processing LiDAR data in forested environments. It classifies data points as ground or non-ground using the Multiscale Curvature Classification algorithm. -
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SEG-Y files need special compression because they don't compress well using gzip and the like. The code is cross-platform C++ using nothing else than standard system libraries. This is a spin-off from the OpendTect project (http://opendtect.org).
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NeedlemanWunsch
Fast global sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align Global optimal sequence alignment using the Needleman-Wunsch algorithm. Aligns DNA, RNA, protein sequence and more! See our sister project local alignment using Smith-Waterman: http://sourceforge.net/projects/smithwaterman/ -
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ForeRunner X01 toolkit provides an easy access to Forerunner 201/301/305/305E GPS-units. There are multiple command line tools to read data from GPS into database and tools to export data in different formats like gpx and tcx.
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Frc Robot Simulator
A library that allows programs for a NI CRIO to be run on a computer.
A simulator that allows programs written in Java for a National Instruments CRIO to be run on a local computer by overloading the libraries provided by WPI. Some things we've fixed since 0.1a: Kinect no longer throws an exception upon instantiation, the Watchdog is usable, array elements can now be edited in the gui, and lots of under the hood reimplementation to replace native methods. DISCLAIMER: this is not like the diamond bullet studios simulation, this only simulates how the... -
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Topographica
Simulation software for brain modelling
Topographica is a neural modeling package developed in a Human Brain Project grant from NIH. Topographica helps neuroscientists and computational scientists simulate and understand how topographic maps contribute to brain function. Topographica is now primarily maintained at github.com; see https://github.com/ioam/topographica for recent updates and releases. -
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Evrika
Science simulator and advanced calculator based on modules
Evrika is a science simulator and advanced calculator, which is based on modules. Modules are libraries containing definitions of concepts that can be used in the simulation. By definitions we mean properties, actions, reactions, etc. Evrika is used for creating both simulations and modules, so you can build your own module of elements, then use them to create virtual experiments and simulations. Also, you can make advanced calculations. Evrika is basically an executable that reads and... -
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SunlightLB is an open-source 3d lattice Boltzmann code which can be used to solve a variety of hydrodynamics problems, including passive scalar transport problems.
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SunlightCBM is a suite of perl scripts for constraint-based modelling and flux-balance analysis in metabolic networks.
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Decision Table Preprocessor
Ccide is a Decision Table preprocessor.
Ccide reads a source program, in one of several programming languages, expands all embedded decision tables, and generates the new, expanded source. Ccidew processes C language programs directly. The script, ccide, uses ccidew and m4, to process BASIC, JAVA, CC, C++, BASH, QB, VB, and EX(euphoria), source files containing embedded decision tables. Ccide checks all conditions once and only once, avoiding side effects. Ccide checks tables for conflicts and other... -
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