Showing 3765 open source projects for "java-decompiler.jar"

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  • 1
    Flamethyst is a flame fractal renderer written in java. It generalizes the classical algorithm in several ways, and support most features of Apophysis .flame files.
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  • 2
    GNomEx

    GNomEx

    A Genomic LIMS and Data Repository

    ...Experiment platforms supported include Illumina HiSeq, MiSeq, iScan, ABI Sanger sequencing, Affy and Agilent Microarrays, Sequenom MassArray and Bioanalyzer. GNomEx is a web application with a Flash client user interface and a Java backend that runs on Apache Tomcat. MySQL is used for the database, although any modern RDBMS can be used.
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  • 3

    Belief Reviser

    Belief Revision via PS-Merge under constraints belief merging operator

    Belief revision is a central topic in knowledge representation and reasoning. It consists in incorporating a new belief, changing as few as possible of the original beliefs while preserving consistency. Revision always considers new evidence as a better belief. Such new evidence is usually represented in the form of a propositional formula which must be preserved after the revision. Here, the Δps (PS-Merge) belief merging operator is extended in order to consider constraints, and ...
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  • 4
    ICon (Input Configurator) is a Java-based system for managing input devices and building advanced interaction techniques using a dataflow model. It contains a runtime engine, a rich library of input devices, several processing modules and a visual editor.
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  • 5
    BABA stands for Basic-Algorithms-of-Bioinformatics Applet. This project aims to create a set of bioinformatic algorithms presented didactically. The algorithms available at the moment are: Needleman&Wunsch, Smith&Waterman, Four Russians and Nussinov.
    Downloads: 1 This Week
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  • 6
    Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutit
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  • 7
    Phrasal

    Phrasal

    Statistical phrase-based machine translation system

    Stanford Phrasal is a state-of-the-art statistical phrase-based machine translation system, written in Java. At its core, it provides much the same functionality as the core of Moses. Distinctive features include: providing an easy to use API for implementing new decoding model features, the ability to translating using phrases that include gaps (Galley et al. 2010), and conditional extraction of phrase-tables and lexical reordering models.
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  • 8
    RoWordNetLib

    RoWordNetLib

    Java API for the Romanian WordNet

    Java API for the Romanian WordNet. Please note that the actual WordNet for Romanian (the XML file containing the network) is not included, it can be obtained (due to its license restrictions) from: http://ws.racai.ro:9191/repository/browse/romanian-wordnet-30/4611a43efb6811e2a8ad00237df3e3580b6b50d1111c4a6292694bded91d5c14/ **** If you would like a direct download of the API containing the RoWordNet xml file, please download them both from : http://www.racai.ro/tools/text/rowordnet/ **** Please cite: Dumitrescu, Ștefan Daniel. ...
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  • 9

    bioNerDS

    Bioinformatics Named Entity Recogniser for Databases and Software

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  • 10
    CoNet

    CoNet

    Find relationships between repeatedly observed items

    CoNet is a Cytoscape plugin that detects significant non-random patterns of co-occurrence (copresence and mutual exclusion) in incidence and abundance data. It has been designed with (microbial) ecological data in mind, but can be applied in general to infer relationships between objects observed in different samples (for example between genes present or absent across organisms).
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  • 11
    BenchLab is a Web Application benchmarking framework using real web browsers.
    Downloads: 3 This Week
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  • 12
    Entity recognition and normalization software for biomedical text
    Downloads: 20 This Week
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  • 13

    VnDP

    A Vietnamese dependency parsing toolkit

    VnDP is a Vietnamese dependency parsing toolkit which integrates a pre-trained parsing model and a pre-trained POS tagging model. The parsing model was trained on our VnDT Vietnamese dependency Treebank which was automatically converted from the Vietnamese constituent Treebank. See more details in VnDP's website at http://vndp.sourceforge.net/
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  • 14
    This ohnlp project has released "pipelines" that were contributed by members of the OHNLP Consortium. The pipelines are based on the Apache UIMA framework. medKAT/P, MedCoref, MedTagger, MedXN, and cTAKES are licensed under Apache License V2.0. MedTime is licensed under GNU General Public License version 3.0 (GPLv3). cTAKES development has moved to apache.org. See http://ctakes.apache.org/
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  • 15

    jarta

    A Java library to model and fit ARTA processes.

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  • 16
    For the process of RDF dataset transformation the R2R Framework specifies a mapping language and an implementation in form of a a Java API. More infos at: http://www4.wiwiss.fu-berlin.de/bizer/r2r/
    Downloads: 13 This Week
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  • 17
    RAPSim - Microgrid Simulator

    RAPSim - Microgrid Simulator

    An easy to use GUI enables electric source and grid simulation.

    RAPSim (Renewable Alternative Powersystems Simulation) is a free and open source micro-grid simulation framework for better understanding of power flowing behavior in smart microgrids with renewable sources. It is able to simulate grid-connected or standalone microgrids with solar, wind or other renewable energy sources. The proposed software calculates the power generated by each source in the microgrid and then it conducts a power flow analysis. This software is helpful for optimal...
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    Downloads: 6 This Week
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  • 18
    Limpopo is a library for MAGE-TAB parsing and validation that will read mage-tab files into an object model, and includes a plugin mechanism that is open and extensible for writing MAGE-TAB data to other data resources such as a database.
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  • 19

    erne

    ERNE - Extended Randomized Numerical alignEr

    We present ERNE (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE comprises ERNE-FILTER (read trimming and continamination filtering), ERNE-MAP (core alignment tool/algorithm), ERNE-BS5 (bisulfite treated reads aligner), and ERNE-PMAP/ERNE-PBS5 (distributed versions of the aligners),
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  • 20
    SuperCollider

    SuperCollider

    Real-time audio synthesis engine and music programming language

    N.B. SuperCollider is now hosted at GitHub, and the most recent versions can be downloaded from there. http://supercollider.github.io A real time audio synthesis engine, and an object-oriented programming language specialised for music. SuperCollider was created in 1996 by James McCartney, now (since version 3) released as free software.
    Downloads: 6 This Week
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  • 21

    Bamformatics

    Toolkit and GUI for sequencing data analysis

    The Bamformatics project aims to provide a coherent and consistent approach to analysis of high-throughput sequencing data. Its toolkit includes, among others, programs to identify variants and to compute various types genomic tracks. It also provides a graphical user interface to facilitate general bioinformatic workflows. The project wiki contains further details.
    Downloads: 0 This Week
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  • 22
    QueueSimulator

    QueueSimulator

    Simulator of G/G/k queue systems used in computer networks.

    QueueSimulator is a free software which aims to simulate primarily G/G/k queueing systems that are used in computer networks. But it can be used to simulate practically any stable queue system.
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  • 23
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  • 24
    PromKappa 2.0 (DNA patterns in Java)

    PromKappa 2.0 (DNA patterns in Java)

    PromKappa 2.0 (Java source code and bin)

    A Java adaptation of DNA patterns based on the article "Eukaryotic genomes may exhibit up to 10 generic classes of gene promoters". by Ilie Guta (Java source code for DNA patterns)
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  • 25
    ImagingBook

    ImagingBook

    Java source code for image processing books by Burger & Burge

    NOTE: The source repository for this project has been moved to a NEW LOCATION: ************************************************************************************ https://github.com/imagingbook/imagingbook-public ************************************************************************************
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