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Showing 2411 open source projects for "two"
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Bowtie 2
A fast and sensitive gapped read aligner
...The tool builds compact FM-index-based reference indexes, keeping memory usage low even for large genomes like the human genome. Bowtie 2 outputs alignments in SAM format and includes companion utilities for building and inspecting indexes. It is widely used in bioinformatics pipelines for RNA-seq, DNA-seq, metagenomics, variant analysis, and other sequencing-based research tasks. Overall, Bowtie 2 remains a foundational command-line tool for high-throughput sequence alignment and reproducible computational biology workflows. -
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Evo 2
Genome modeling and design across all domains of life
Evo 2 is a DNA language model system designed for long-context genome modeling and biological sequence design across all domains of life. The project models DNA at single-nucleotide resolution and supports context windows of up to one million base pairs, which places it in a class of models built for very large genomic reasoning tasks. According to the repository, it uses the StripedHyena 2 architecture, was pretrained with Savanna, and was trained autoregressively on the OpenGenome2 dataset containing 8.8 trillion tokens. ... -
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QPanda 2
QPanda 2 is an open source quantum computing framework
QPanda2 is an open source quantum computing framework developed by Origin Quantum, which can be used to build, run and optimize quantum algorithms. QPanda2 is the basic library of a series of software developed by Origin Quantum, which provides core components for QRunes, Qurator and quantum computing services. -
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CloudCompare
CloudCompare main repository
CloudCompare is a 3D point cloud (and triangular mesh) processing software. It was originally designed to perform comparison between two 3D points clouds (such as the ones obtained with a laser scanner) or between a point cloud and a triangular mesh. It relies on an octree structure that is highly optimized for this particular use-case. It was also meant to deal with huge point clouds (typically more than 10 million points, and up to 120 million with 2 GB of memory). -
Stop Cyber Threats with VM-Series Next-Gen Firewall on AzureGain integrated visibility across all traffic in a single pass. Deploy Palo Alto Networks VM-Series to determine application identity and content while automating security policy updates via rich APIs.
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alphageometry
AI-driven neuro-symbolic solver for high-school geometry problems
AlphaGeometry, developed by Google DeepMind, is a theorem-proving system that combines symbolic reasoning with deep learning to solve challenging geometry problems, such as those found in mathematical Olympiads. The repository provides the full implementation of DDAR (Deductive Difference and Abductive Reasoning) and AlphaGeometry, two automated geometry solvers described in the 2024 Nature paper “Solving Olympiad Geometry without Human Demonstrations.” AlphaGeometry integrates a symbolic deduction engine with a transformer-based language model to propose and validate geometric constructions in a stepwise proof process. The DDAR solver focuses purely on rule-based reasoning, while AlphaGeometry enhances this by using a learned model to suggest auxiliary constructions when logical reasoning alone is insufficient. ... -
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Baritone
Google maps for block game
A Minecraft pathfinder bot. Baritone is the pathfinding system used in Impact since 4.4. How to immediately get started: Type #goto 1000 500 in chat to go to x=1000 z=500. Type #mine diamond_ore to mine diamond ore. Type #stop to stop. For more, read the usage page and/or watch this tutorial playlist. For other versions of Minecraft or more complicated situations or for development, see Installation & setup. Also consider just installing Impact, which comes with Baritone and is easier to... -
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Qiskit
Qiskit is an open-source SDK for working with quantum computers
Qiskit [kiss-kit] is an open-source SDK for working with quantum computers at the level of pulses, circuits, and application modules. When you are looking to start Qiskit, you have two options. You can start Qiskit locally, which is much more secure and private, or you get started with Jupyter Notebooks hosted in IBM Quantum Lab. Qiskit includes a comprehensive set of quantum gates and a variety of pre-built circuits so users at all levels can use Qiskit for research and application development. The transpiler translates Qiskit code into an optimized circuit using a backend’s native gate set, allowing users to program for any quantum processor or processor architecture with minimal inputs. ... -
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lidarslam_ros2
ROS 2 package of 3D lidar slam using ndt/gicp registration
ROS 2 package of 3D lidar slam using ndt/gicp registration and pose-optimization. ros2 slam package of the frontend using OpenMP-boosted gicp/ndt scan matching and the backend using graph-based slam. -
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Leiningen
Automate Clojure projects easily
...It does not cover learning the language itself; good Clojure documentation can be found elsewhere. If your preferred package manager offers a recent version of Leiningen, try that first as long as it has version 2.x. Windows users can use the above script in the Linux subsystem or try the batch file or Powershell version instead. Most tasks need to be run from somewhere inside a project directory to work, but some (new, help, search, version, and repl) may run from anywhere. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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OpenLoco
An open source re-implementation of Chris Sawyer's Locomotion
...OpenLoco aims to improve the game similar to how OpenTTD improved Transport Tycoon, and OpenRCT2 improved RollerCoaster Tycoon. CSL was originally written in x86 assembly, building on top of the RollerCoaster Tycoon 2 engine. However, the engine has changed substantially enough that OpenLoco currently does not share its codebase with OpenRCT2. The reimplementation efforts of OpenLoco are gradual, aiming to ultimately rewrite the entire game in C++. In the earlier years of the project, the in-game UI has been completely reimplemented, and most of the underlying data and object structures have been uncovered. ... -
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Mathematics Dataset
This dataset code generates mathematical question and answer pairs
...Each question is programmatically generated with structured templates to ensure clear logic and reproducibility. The dataset enables models to learn mathematical problem-solving through examples that involve both numeric and symbolic reasoning. Version 1.0 includes over 2 million examples per category, with training splits labeled as “easy,” “medium,” and “hard,” supporting curriculum-based learning strategies. The data can be accessed via PyPI or generated locally using provided Python scripts, with outputs formatted for direct use in training or evaluation pipelines. -
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JAX
Composable transformations of Python+NumPy programs
...It can differentiate through loops, branches, recursion, and closures, and it can take derivatives of derivatives of derivatives. It supports reverse-mode differentiation (a.k.a. backpropagation) via grad as well as forward-mode differentiation, and the two can be composed arbitrarily to any order. What’s new is that JAX uses XLA to compile and run your NumPy programs on GPUs and TPUs. Compilation happens under the hood by default, with library calls getting just-in-time compiled and executed. But JAX also lets you just-in-time compile your own Python functions into XLA-optimized kernels using a one-function API, jit. ... -
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WaterLily.jl
Fast and simple fluid simulator in Julia
WaterLily.jl is a fluid dynamics simulation package in Julia that uses lattice Boltzmann methods (LBM) to simulate incompressible flows and fluid-structure interactions in two dimensions. It is designed for easy use and rapid prototyping of physical systems involving particles, obstacles, and hydrodynamic forces. The package is well-suited for educational purposes, computational physics research, and lightweight fluid simulations. -
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ta4j
A Java library for technical analysis
...We can calculate indicators over this bar series, in order to forecast the direction of prices through the study of past market data. Then we have to build our trading strategy. It is made of two trading rules, one for entry, the other for exit. Ta4j comes with a set of basic trading rules/strategies which can be combined using boolean operators. Trading strategies can be easily compared according to a set of analysis criteria. Ta4j can also be used for live trading with more complicated strategies. -
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elasticsearc-php
PHP low-level client for Elasticsearch
...Deliberately built to be as simple as possible, easily usable and with explicit naming. Elasticsearch Bundle was created in order to serve the need for professional Elasticsearch integration with enterprise level Symfony 2 systems. Automatically generate mappings using a serializer. Listeners for Doctrine events for automatic indexing. -
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Gonum
Set of numeric libraries for the Go programming language
Gonum is a set of numeric libraries for the Go programming language. It contains libraries for matrices, statistics, optimization, and more. Gonum is a set of packages designed to make writing numerical and scientific algorithms productive, performant, and scalable. Gonum contains libraries for matrices and linear algebra; statistics, probability distributions, and sampling; tools for function differentiation, integration, and optimization; network creation and analysis; and more. We... -
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MyBatis Mapper4
Mybatis common mapper, easy to use
This book starts with a simple MyBatis query to build a basic development environment for learning MyBatis. Through a comprehensive sample code and test, the basic usage of adding, deleting, modifying, and checking operations in the MyBatis XML mode and annotation mode is explained, and the application of dynamic SQL in different aspects and the best practice program in the use process are introduced. Provides a wealth of examples for MyBatis advanced mapping, stored procedures, and type... -
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CycleGAN and pix2pix in PyTorch
Image-to-Image Translation in PyTorch
CycleGAN and pix2pix in PyTorch repository is a PyTorch implementation of two influential image-to-image translation frameworks: CycleGAN (for unpaired translation) and pix2pix (for paired translation). This repo gives developers and researchers a convenient, modern (PyTorch-based) platform to train and test these methods — supporting both paired datasets (input to output) and unpaired datasets (domain-to-domain) with minimal changes. -
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Surya
Implementation of the Surya Foundation Model for Heliophysics
Surya is an open‑source, AI‑based foundation model for heliophysics developed collaboratively by NASA (via the IMPACT AI team) and IBM. Named after the Sanskrit word for “sun,” Surya is trained on nine years of high‑resolution solar imagery from NASA’s Solar Dynamics Observatory (SDO). It is designed to forecast solar phenomena—such as flares, solar wind, irradiance, and active region behavior—by predicting future solar images with a sophisticated long–short vision transformer architecture,... -
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FairChem
FAIR Chemistry's library of machine learning methods for chemistry
FAIRChem is a unified library for machine learning in chemistry and materials, consolidating data, pretrained models, demos, and application code into a single, versioned toolkit. Version 2 modernizes the stack with a cleaner core package and breaking changes relative to V1, focusing on simpler installs and a stable API surface for production and research. The centerpiece models (e.g., UMA variants) plug directly into the ASE ecosystem via a FAIRChem calculator, so users can run relaxations, molecular dynamics, spin-state energetics, and surface catalysis workflows with the same pretrained network by switching a task flag. ... -
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Maxima -- GPL CAS based on DOE-MACSYMA
Computer Algebra System written in Common Lisp
Maxima is a computer algebra system comparable to commercial systems like Mathematica and Maple. It emphasizes symbolic mathematical computation: algebra, trigonometry, calculus, and much more. For example, Maxima solves x^2-r*x-s^2-r*s=0, giving the symbolic results [x=r+s, x=-s]. It can also calculate with exact integers and fractions, native floating-point, and high-precision big floats. Maxima has user-friendly front-ends, an online manual, plotting commands, and numerical libraries. It features its own programming language, and many users have contributed useful packages in various areas over the decades. ... -
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Snap7
32/64 bit multi-platform Ethernet S7 PLC communication suite
Snap7, through three specialized components: Client and the inedited Server and Partner, allows you to definitively integrate your PC based systems into a PLC automation chain. Designed to transfer large amounts of hi-speed data in industrial facilities, it scales easily, down to small Linux Arm boards such as Raspberry PI. Hi level object oriented wrappers are provided, currently C/C++, .NET/Mono, Pascal, LabVIEW, Python with many source code examples. Very easy to use, a full... -
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OpenMRS
Open source Health IT for the planet
OpenMRS is a community-developed, open source, enterprise electronic medical record system. Our mission is to improve health care delivery in resource-constrained environments by coordinating a global community to creates and support this software. -
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Gwyddion
Scanning probe microscopy data visualisation and analysis
A data visualization and processing tool for scanning probe microscopy (SPM, i.e. AFM, STM, MFM, SNOM/NSOM, ...) and profilometry data, useful also for general image and 2D data analysis. -
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MatCont
Numerical Bifurcation Analysis Toolbox in Matlab
...Please do us a favour and cite: New features of the software MatCont for bifurcation analysis of dynamical systems. A. Dhooge, and W. Govaerts, Yu.A. Kuznetsov, H.G.E. Meijer and B. Sautois, MCMDS 2008, Vol. 14, No. 2, pp 147-175 In case you're stuck, use the forum, but to get a good answer provide: 1. What command do you give when this appears? Provide the exact steps. Stating "no convergence" is not enough. 2. Most procedures are explained in the Tutorials. There is a manual with detailed descriptions of the data.
