Showing 279 open source projects for "image analysis algorithm"

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  • 1
    iCn3D

    iCn3D

    Web-based protein structure viewer and analysis tool

    "I see in 3D" (iCn3D) Structure Viewer is not only a web-based 3D viewer, but also a structure analysis tool interactively or in the batch mode using NodeJS scripts based on the npm package icn3d. iCn3D synchronizes the display of 3D structure, 2D interaction, and 1D sequences and annotations. Users' custom displays can be saved in a short URL or a PNG image. The complete package of iCn3D including Three.js and jQuery is in the directory "dist" after you get the source code with the "Code" button. ...
    Downloads: 5 This Week
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  • 2
    CRC RevEng

    CRC RevEng

    Arbitrary-precision CRC calculator and algorithm finder

    CRC RevEng is a portable, arbitrary-precision CRC calculator and algorithm finder. It calculates CRCs using any of the 113 preset algorithms, or a user-specified algorithm to any width. It calculates reversed CRCs to give the bit pattern that produces a desired forward CRC. CRC RevEng also reverse-engineers any CRC algorithm from sufficient correctly formatted message-CRC pairs and optional known parameters. It comprises powerful input interpretation options. Compliant with Ross Williams'...
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    Downloads: 112 This Week
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  • 3
    Plot Digitizer
    An easy to use Java program that allows you to digitize data points off of scanned plots, scaled drawings, or orthographic photographs. Includes an automatic digitization feature that can automatically digitize many types of functional data.
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    Downloads: 212 This Week
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  • 4
    SAGA GIS
    SAGA - System for Automated Geoscientific Analyses - is a Geographic Information System (GIS) software with immense capabilities for geodata processing and analysis. SAGA is programmed in the object oriented C++ language and supports the implementation of new functions with a very effective Application Programming Interface (API). Functions are organised as modules in framework independent Module Libraries and can be accessed via SAGA’s Graphical User Interface (GUI) or various scripting...
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    Downloads: 7,051 This Week
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  • 5
    ProStack

    ProStack

    ProStack - a platform for image processing and analysis

    ProStack - a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. RPMs are available at https://build.opensuse.org/project/repositories/home:mackoel:compbio
    Downloads: 0 This Week
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  • 6
    Gwyddion

    Gwyddion

    Scanning probe microscopy data visualisation and analysis

    A data visualization and processing tool for scanning probe microscopy (SPM, i.e. AFM, STM, MFM, SNOM/NSOM, ...) and profilometry data, useful also for general image and 2D data analysis.
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    Downloads: 1,403 This Week
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  • 7
    BioXTAS RAW

    BioXTAS RAW

    Processing and analysis of Small Angle X-ray Scattering (SAXS) data.

    BioXTAS RAW is a program for analysis of Small-Angle X-ray Scattering (SAXS) data. The software enables: creation of 1D scattering profiles from 2D detector images, standard data operations such as averaging and subtraction, analysis of radius of gyration (Rg) and molecular weight, and advanced analysis using GNOM and DAMMIF as well as electron density reconstructions using DENSS. It also allows easy processing of inline SEC-SAXS data and data deconvolution using the evolving factor analysis...
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    Downloads: 177 This Week
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  • 8

    InteredgeDistance

    An ImageJ macro to measure distance between two lines

    InteredgeDistance is a macro for ImageJ/Fiji image analysis software. This tool measures the distance between two user-drawn lines on an image. For community help/support, please use https://forum.image.sc/.
    Downloads: 3 This Week
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  • 9
    SMILI

    SMILI

    Scientific Visualisation Made Easy

    The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with graphical user interfaces and/or via the command-line. See our YouTube channel for tutorial videos via the homepage. The applications are all built out of a uniform user-interface framework that provides a very high level (Qt) interface to powerful image processing and scientific visualisation algorithms from the Insight Toolkit (ITK) and Visualisation Toolkit (VTK). ...
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    Downloads: 9 This Week
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  • 10
    itom

    itom

    itom - an Open Source Measurement, Automation and Evaluation Software

    itom is an open source software suite for operating measurement systems, laboratory automation and data evaluation. One main application of itom is the development and operation of sensor and measurement system for instance in a laboratory environment. Therefore, the software has to be able to communicate with a wide range of different hardware systems, such as cameras or actuators and should provide a diversified and as complete as possible set of evaluation and data processing methods....
    Downloads: 2 This Week
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  • 11

    libdspl-2.0

    libdspl-2.0 is opensource cross-platform digital signal processing alg

    libdspl-2.0 — opensource cross-platform digital signal processing algorithm library, written in C language. Distributed under LGPL v3 license. This allows to use this library in all applications with dynamic linking.
    Downloads: 0 This Week
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  • 12
    Fractal Zoomer

    Fractal Zoomer

    A Fractal Zoomer with various functions.

    An application that lets you render some of the most known fractal functions, like the Mandelbrot set and many more! It comes with alot of options to further enhance your fractal experience! Its easy to use and does not require installation. A java version higher than 1.8 is required to be installed.
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    Downloads: 17 This Week
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  • 13
    MensorGIS

    MensorGIS

    Open Source Desktop GIS with Surveying and Cartography Functionality

    ...Should be seen as a Learn-GIS with basic Algorithms and Functionality in VB.NET and C#.NET without usage of Software Libraries: CAD/GIS Data (DXF, ShapeFile, GML2, GPX, KML, CSV), Data Schema, Query, Analysis, Topology, Contours, Ortho-Image Registration, Least Squares Adjustment. Also world-wide Geodata of Countries and POIs are available. A companion Scriptum gives explanation about the Theory behind MensorGIS.
    Downloads: 1 This Week
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  • 14
    iElectrodes

    iElectrodes

    intracranial electrodes localization toolbox

    ...Precise and reliable localization can be achieved fast and in a semiautomatic way with minimal user intervention. The toolbox works with ECoG (subdural grids and strips) and SEEG (depth) electrodes. The new GridFit algorithm can precisely localize high-density electrodes (up to 3mm). Brain parcellations (atlas) and surfaces can be imported to aid 2D and 3D visualization and anatomical localization can be done in native or normalized space. You can plan grid and depth electrode array implantations and compare them with the implanted locations. Additional scripts are provided for image coregistration using SPM, Freesurfer pipeline integration, etc. ...
    Downloads: 2 This Week
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  • 15
    miRDeep*

    miRDeep*

    MiRDeep*

    Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction.
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    Downloads: 6 This Week
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  • 16

    openSkyMatch

    Matches OpenScience Observatories images with astronomical catalogs

    openSkyMatch is a collection of Linux shell and Python scripts designed for the OpenScience Observatories program. It automates the identification and matching of detected celestial objects in locally captured FITS images with entries in large-scale sky catalogs, notably Pan-STARRS1 DR2 (II/389/ps1_dr2). The toolkit supports data preprocessing, coordinate correlation, and catalog-based validation of astronomical detections. All tools are open-source and optimized for reproducibility and...
    Downloads: 0 This Week
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  • 17
    LabRPS

    LabRPS

    Random phenomena generator

    This is an official mirror of LabRPS. Code and release files are primarily hosted on https://github.com/LabRPS/LabRPS and mirrored here LabRPS aims to be a tool for the numerical simulation of random phenomena such as stochastic wind velocity, seismic ground motion, sea surface ... etc. It can be in a wide range of uses around engineering, such as random vibration or vibration fatigue in mechanical engineering, buffeting analysis in bridge engineering.... LabRPS is mainly to assist...
    Downloads: 1 This Week
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  • 18
    gendasm

    gendasm

    Generic Code-Seeking Diassembler with Fuzzy-Function Analyzer

    GenDasm is a Generic Code-Seeking Diassembler engine. It allows you to enter known starting vectors for a given code image for the micro. It will disassemble the code and follow through branches to assist in the separation of code and data. Its included Fuzzy Function Analyzer companion uses a DNA Sequence Alignment Algorithm to locate similar code in multiple binaries to facilitate reverse-engineering and/or code recovery. The original purpose of the Fuzzy Function Analyzer was to assist in code recovery where the source code for the current binaries got lost, yet the source code for an old binary was retained. ...
    Downloads: 0 This Week
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  • 19
    whiteboxgui

    whiteboxgui

    An interactive GUI for WhiteboxTools in a Jupyter-based environment

    The whiteboxgui Python package is a Jupyter frontend for WhiteboxTools, an advanced geospatial data analysis platform developed by Prof. John Lindsay (webpage; jblindsay) at the University of Guelph's Geomorphometry and Hydrogeomatics Research Group. WhiteboxTools can be used to perform common geographical information systems (GIS) analysis operations, such as cost-distance analysis, distance buffering, and raster reclassification. Remote sensing and image processing tasks include image enhancement (e.g. panchromatic sharpening, contrast adjustments), image mosaicing, numerous filtering operations, simple classification (k-means), and common image transformations. ...
    Downloads: 0 This Week
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  • 20
    Bio7
    The application Bio7 is an integrated development environment for ecological modelling and contains powerful tools for model creation, scientific image analysis and statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge flexibility in configuration and extensibility because of its plug-in structure and the possibility of customization.
    Downloads: 6 This Week
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  • 21
    GXSM

    GXSM

    Scanning Probe Microscopy Controller and Data Visualization Software

    GXSM -- Gnome X Scanning Microscopy: A multi-channel image and vector-probe data acquisition and visualization system designed for SPM techniques (STM,AFM..), but also SPA-LEED/LEED/LEEM data analysis. A plug-in interface allows any user add-on data-processing and special hardware and instrument support. Latest: NC-AFM and related explorative methods as SQDM can be configured. High-Speed external PAC-PLL hardware option with digital DSP link.
    Downloads: 1 This Week
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  • 22
    Blueprint XAS
    Blueprint XAS is a Matlab-based suite designed for the processing and analysis of near-edge x-ray absorption spectroscopy (XAS) data. The suite is designed primarily to assist users in exploring reasonable fit solutions while minimizing user bias.
    Downloads: 0 This Week
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  • 23
    NaveGo

    NaveGo

    NaveGo: an open source MATLAB/GNU Octave toolbox for processing integr

    NaveGo is an open source MATLAB/GNU Octave toolbox designed for processing integrated navigation systems, simulating inertial sensors and GNSS receivers, and profiling inertial sensors using methods like Allan variance—providing a community-driven simulation framework for navigation system design and analysis. I am reaching out to share an important update regarding the NaveGo project. Due to a shift in both my professional career and personal interests away from navigation systems, I have...
    Downloads: 0 This Week
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  • 24
    Interactome  Transcriptome Integration
    The Interactome-Transcriptome Integration (ITI) algorithm allows the analysis of gene expression data by superimposition of a large scale protein-protein interaction data (human interactome) over several gene expression datasets. ITI extracts regions in the interactome with differentiating expression over two conditions. These subnetworks can that be used to build a generalizable and stable genomic signature for genomic/cancer classification.
    Downloads: 0 This Week
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  • 25
    XISMuS

    XISMuS

    X-Ray Imaging Software for Multiple Samples

    ATTENTION: Cumulative update 2.5.0 has been released!! The update works for any previous 2.x.x version. If upgrading from version v1.x.x, please download and install v2.0.0 first. IMPORTANT FIXES in respect to base v2.0.0 version: v.2.5.0 introduces the Differential Attenuation and Cube Viewer utilities, and migrates user database to *.json files v2.4.3 fixes a with K element in the fit-approx method v2.4.3 fixes and issue where saving plots with fit-approx or a auto-wizard could...
    Downloads: 0 This Week
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