Search Results for "association"
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Showing 36 open source projects for "association"
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Criterial
The package for statistical data analysis and applied mathematics
Putting truth before show-off. Criterial is an add-in for desktop versions of LibreOffice Calc (and forks) for statistical data analysis. The project is built on the refined expertise and core concepts of the AtteStat and StatAnt projects. Completely free. No donations required. Comes with absolutely no warranty. Rating: Everyone (All ages). MEDICAL DISCLAIMER: This software is not certified for use in healthcare and should not be used for diagnostic or treatment purposes. NOTICE FOR EU... -
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TASSEL
TASSEL is a bioinformatics software package
TASSEL is a bioinformatics software package that can analyze diversity for sequences, SNPs, or SSRs. Genotype/phenotype associations can be carried out by GLM or a mixed model. Estimates distance and linkage disequilibrium statistics. -
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Open source steam property routines in C. Implements the IAPWS-IF97 steam tables from the International Association for the Properties of Water and Steam. Includes two-way property solvers and test suite. Can be used from C/C++, Fortran, Python, LabVIEW, Octave and ASCEND.
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Triangolo
Liothyronine dosage calculator
Calculator software helping to determine L-T4 and L-T3 substitution dosage according to the algorithms provided by the European Thyroid Association (ETA). -
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Linguistic Analyzer
The Linguistic Analyzer is a tool for corpus analysis and comparison
The Linguistic Analyzer (Almuhalil Alloghawy) is a free tool designed by a team from Al-Imam Muhammad bin Saud islamic university that can be used for corpus analysis and comparison in terms of the several linguistic characteristics, such as frequency lists generation, concordances, collocation extraction, the difference between two words, and keyword identification. -
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Meaning Explorer
A tool for analyzing the words of the Quran
...The Meaning Explorer applies a new distributional semantic model to extract words’ significant co-occurrences from the Quran. This model is based on the Refined MI association measure applied to all words within a symmetric sliding window of five words surrounding the node word. The Refined MI association measure is chosen because of its remarkable ability ability to extract syntagmatic relations between the words of the Quran. -
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ParseCNV CNV call association software takes CNV calls as input and creates SNP based statistics for CNV occurrence in population study cases and controls then calls CNVRs based on neighboring SNPs of similar significance.
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MOSGWA
genome wide association studies / Bayesian-type information criteria
MOSGWA is a tool for genome wide association studies (GWAS). It currently implements a search strategy using logistic regression and linear regression. -
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Lattice Miner is a data mining prototype for creating, visualizing and exploring concept (Galois) lattices. It allows the generation of formal concepts and association rules.
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SPANDx
Comparative analysis of haploid next-generation genome sequence data
...A presence/absence matrix is also generated to allow you to identify the core/accessory genome content across all your genomes. The outputs generated by SPANDx can be imported into PLINK for microbial genome-wide association study (mGWAS) analyses. SPANDx can utilise PBS, SGE or SLURM for resource management. SPANDx can also run directly on the command line if no resource manager is available. For the most up-to-date version of SPANDx, check us out on GitHub: https://github.com/dsarov/SPANDx -
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PriorityPruner is a software program which can prune a list of SNPs that are in high linkage disequilibrium (LD) with other SNPs in the list, while preferentially keeping SNPs of higher priority (e.g., the most significant SNPs in a genome-wide association study).
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Open source development for FluidEarth (https://fluidearth.net/default.aspx) which supports the OpenMI Standard (http://openmi.sourceforge.net) Here are OpenMI Association approved applications.
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mwetoolkit
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/ The Multiword Expressions toolkit aids in the automatic identification and extraction of multiword units in running text. These include idioms (kick the bucket), noun compounds (cable car), phrasal verbs (take off, give up), etc. Even though it focuses on multiword expresisons, the framework is quite complete and can also be useful in any corpus-based study in computational linguistics. The mwetoolkit can be... -
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gametes
Generate complex SNP models and heterogeneous datasets
Genetic Architecture Model Emulator for Testing and Evaluating Software (GAMETES) is an algorithm for the generation of complex single nucleotide polymorphism (SNP) models for simulated association studies. GAMETES is designed to generate epistatic models which we refer to as pure and strict, that constitute the worst-case in terms of detecting disease associations, since such associations may only be observed if all n-loci are included in the disease model. User friendly GAMETES software rapidly and precisely generates epistatic multi-locus models, and can generate simulated datasets based on these models. ... -
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GENIE (GEne-geNe IntEraction)
GPU based Parallel Gene-Gene Interaction Analysis
...Here we present a novel software package GENIE, which utilizes the power of multiple GPU or CPU processor cores to parallelize the interaction analysis. Citation: Chikkagoudar, S., Wang, K., & Li, M. (2011). GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores. BMC research notes, 4(1), 158. -
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RVASSOC is a simple program for performing various tests for association between genotypes and disease status using sequence variants from unrelated cases and controls. It was designed to accommodate both rare variants and missing genotypes.
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MCPerm: Monte Carlo SNP permutation
Monte Carlo permutation method for SNP multiple test correlation
MCPerm: A Monte Carlo permutation method for multiple test correlation in case-control association study Traditional permutation (TradPerm) test is an important non-parametric analysis method which can be treated as the gold standard for multiple testing corrections in case-control association study. However, it relies on the original single nucleotide polymorphism (SNP) genotypes and phenotypes data to perform a large number of random shuffles, and thus it is computationally intensive, especially for genome-wide association study (GWAS). ... -
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Ruleminer is an experimental tool for performing various data-mining tasks, especially focused on searching for association rules. The aim is to research the association rules mining process and to develop new approaches for solving the related problems.
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jaf_MT
This implements a phrased-based hidden semi-Markov Model for SMT
This package implements the phrased-based hidden semi-Markov model described: Jesús Andrés-Ferrer, Alfons Juan. A phrase-based hidden semi-Markov approach to machine translation. Procedings of European Association for Machine Translation (EAMT), 2009. pp. 168-175. This project depends on jaf_Utils: http://sourceforge.net/projects/jafutils/ Install it prior installation of jaf_MT. -
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...Double Layered Learning for Biological Event Extraction from Text. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. Association for Computational Linguistic
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A native Java port of freesteam - http://freesteam.sourceforge.net/ An open source implementation of international-standard IAPWS-IF97 steam tables from the International Association for the Properties of Water and Steam (IAPWS).
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Ferda is a user friendly data mining tool. It is a modular distributed multiplatform framework based on Internet Communications Engine. Ferda is very powerful in working with association rules.
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Wikipedia Concept Association Map (WCAM) is new approach for textual knowledge representation and understanding. All concepts and associations are stored in a graph database for better performance and easy distribution.
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QtStock allows to do fundamental analysis of companies and companies shares according to the National Association of Investors Corporation (NAIC). It is completely written in C++ with Qt.
