Search Results for "structure" - Page 9

NLOPredict is a nonlinear optical prediction and data analysis tool. Nonlinear optical measurements can yield information about the structure of crystals, and orientation of molecules at surfaces and interfaces.

Advanced Speech Signal Analysis library provides a structure to handle various file formats and a variety of analysis functions commonly used in speech processing.

pyanpha is a shell-based program, which applies the multi-wavelength anomalous diffraction technique to Surface Diffraction. It enables one to calculate the phases of the structure factors of crystal truncation rods when anomalous scatterers are present in the thin film. Functionality extends to standalone simulations. It was coined pyanpha which is an acronym for PYthon ANomalous PHAsing and it is written in python.

Burrow-owl is a software package for visualizing multidimensional nuclear magnetic resonance (NMR) spectra, with an emphasis on spectra used in macromolecular structure determination.

GeoPMS is a project based full paper management system to archive, search and manage scientific papers. GeoPMS has full text search, search by author, search by title and citation import functionality direct from the PDF header, PDF text or RIS. Reference list design can be selected for each project.

Software, components, utilities and XML schema model for automating the exchange of engineering data for the capital facility industry over the total facility life cycle, including design, procurement, construction, operations and maintenance. Detailed cfiXML guidelines and example data dictionaries for control valves, electric motors and pumps, including information on the HI 50.7-2010 Electronic Data Exchange for Pumping Equipment Standard, are available from the website.

Free Organic Chemistry Analysis and Visualisation Tool; Chemical formula editor, calculation of threedimensional molecular structures, high-quality realtime rendering, ...

PHACCS is a bioinformatic tool designed for a scientific public. It gives estimates of the structure and diversity of uncultured viral communities using metagenomic information.

GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.

A Linux driver for RTD DM5408 / DM408 ISA acquisition card. A DKMS module and a dynamic library written from scratch but trying to keep same functions structure of its official Windows 98 driver. I don't recommend it for production. I'm just trying to learn writing drivers for Linux with some interest in Electronics Interfacing.

Graphical User Interface for a software used to assess adaptive evolution in protein-coding genes. Makes use of several known bioinformatics software. IMPACT is free software, targeted to the scientific community. Maldonado E, Dutheil JY, da Fonseca RR, Vasconcelos V, Antunes A (2011) IMPACT: Integrated Multiprogram Platform for Analyses in ConTest. Journal of Heredity, 102 (3): 366-369. doi: https://doi.org/10.1093/jhered/esr003

Software to identify cavities and crevices in proteins. The goal is to be able to take a protein structure, and to differentiate between five different types of environments for each residue: buried, surface, interfacial, cavity, or crevice.

ODD is a tool for optimal domain decomposition of atomic structure guided by the given molecular dynamics data.

PySpline is a graphical, cross-platform program for processing X-ray absorption spectroscopy (XAS) and Extended X-ray absorption fine structure (EXAFS) data. It allows processing parameters to be adjusted and observe the effect on R-space data.

General purpose discrete event simulation (DES) framework for the Python programming language. Khronos gathers ideas from other simulation software and tries to provide a simple and poweful toolset for simulation of discrete systems.

BoulderALE is an RNA alignment editor, which allows for the annotation of basepairs, annotation and collapsing of features (horizontal) and sequences (vertical), along with 2D display of sequences and base composition given a secondary structure.

The sibRNAfold program is a modification of the Vienna RNAfold program for RNA secondary structure prediction through energy minimization.

MathJax is a modular javascript framework for including mathematics in web pages. It can take input in various formats, like TeX and MathML, and can produce output in various forms, such as MathML or HTML-with-CSS. Components are loaded as needed.

This is a C++ library to create and simulate standard and hybrid bond graph. The library support XML input and output of the bond graph structure. Graphic representation of the bond graph in SVG are generated using the Graphviz library.

YaSeTo implements a modification of the widely used Sankoff-Algorithm for sequence/structure alignments of RNA sequences. It is suitable for genome-wide ncRNA gene finding, in case the ncRNA exhibits a conserved secondary structure.

A collection of compact, powerful programs and functions, written in C, for the analysis and transformation of data. No object or structure dependencies, no fancy interfaces - just good tools.

HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures.

The NITE XML Toolkit supports the creation, analysis, and browsing of annotated multimodal, text, or spoken language corpora, and represents both timing and rich linguistic structure. It contains libraries for developers and some end user tools.

...The program assigns four colors to the four nucleotides and text wraps the sequence to create a 2D picture based on the DNA sequence. Great for researching tandem repeats and chromosome structure. Compiled downloads available at http://dnaskittle.com/ Source maintained at https://github.com/josiahseaman/skittle

Open Source project for visualizing protein structure. Written in C++ with Qt and OpenGL the software is designed to be multi-platform (Linux, FreeBSD and Windows). On web: www.msprot.com Copyright 2008 Federal University of Sao Paulo - UNIFESP