Search Results for "console command" - Page 9
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Showing 405 open source projects for "console command"
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EASER
Ensembl Easy Sequence Retriever
Maldonado E, Khan I, Philip S, Vasconcelos V, Antunes A (2013) EASER: Ensembl Easy Sequence Retriever. Evolutionary Bioinformatics, 9:487-490. doi: https://doi.org/10.4137/EBO.S11335. -
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TagCleaner is an application that is able to automatically detect and efficiently remove tag sequences from metagenomic datasets. It is easily configurable and provides a user-friendly interface.
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MpcReader retrieves comet and asteroid orbital data in MPC format from the web and store it on your computer in different formats. The data is fetched from the MPC. The main job of MpcReader is to convert plain MPC data to the format needed for KStar
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Musket - short read error corrector
a parallel short-read error corrector for Illumina sequencing
Musket is an efficient multistage k-mer based corrector for Illumina short read data. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quality and de novo genome assembly measures, reveal that Musket is consistently one of the top performing substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave model and demonstrates... -
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It is a software to program ISP based 8051 controllers(89SXX) on Linux. The software decodes the hex file entered from the command line and send it to controller's flash memory using PC's parallel port.The hardware connections are very minimal.
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This is the former home of pyecm, which has now been moved to github: https://github.com/martingkelly/pyecm Pyecm factors large integers (up to 50 digits) using the Elliptic Curve Method (ECM), a fast factoring algorithm.
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clic
command line interface calculator
CLIC is a command line interface calculator based on readline library. -
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HPN cli calculator
A functional HP-style command-line RPN scientific calculator
HPN is a functional - as opposed to microcode - cross-platform emulation of a classic 1970s Hewlett-Packard scientific calculator for any command-line interface. Its operations completely model the historical and groundbreaking HP-35 series, and functions to support the HP-45 and the later HP-65, 67 and HP-15C are in the pipeline. -
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ParaSim
Parallelized calculation of molecular similarities
Diversity assessments and comparisons of large compound databases require calculating similarities of millions of compounds in an affordable time. ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently... -
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I is a cross-platform programming language designed towards efficiency during development and at runtime.
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psicode
An open-source quantum chemistry program package
PSI is an open-source program for computing molecular properties using high-accuracy, ab initio, quantum mechanical models. -
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MiniKakofonix
Asterix UDP multicast recorder
This program is capable of subscribing to an UDP multicast feed containing (live) radar data in Eurocontrol Asterix format. The received UDP frames are stored in a recording file. A new (raw) Asterix recording file can be created every x minutes. The previously recorded Asterix filename contains date and timestamp. This tool can be used to do continuous 24/7 Asterix multicast recordings. -
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CoVEC
Consensus Variant Effect Classification
The package provides SVM models to be used with SVMlight (http://svmlight.joachims.org/) for drawing a consensus out of individual 3rd-party predictions about the effect of mutations. The 3rd party tools are SIFT, Polyphen2, SNPs&GO and Mutation Assessor. The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the... -
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mobcalPARSER
A cross-platform interface for the *.mfj file format.
mobcalPARSER is a command line based PERL frontend/interface for MOBCAL with limited wrapper functionality. "MOBCAL - A Program to Calculate Mobilities" is available from Professor Martin F. Jarrold's webpage http://www.indiana.edu/~nano/software.html. -
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Simple command-line tool to download/upload firmware to/from STM32 MCU with factory preprogrammed serial bootloader. Look <a href="http://openfacts2.berlios.de/wikien/index.php/BerliosProject:STM%20Flasher">wiki</a> for more info.
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NaRIBaS
Unix-based preparation and analysis toolbox for molecular simulations
Unix-based preparation and analysis toolbox for Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab using bash scripts, Gromacs tools and Matlab functions. NaRIBaS provides a framework that decouples user input parameter and terminal based command lines. NaRIBaS does not replace a simulation software and specific analysis tools like Gromacs, but it allows iterative repetition of tasks while changing specific input parameter. The toolbox is to be understood as a scripting... -
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Command line / filter tool - Analyze, compute and transform numerical data tables of unlimited length
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GEPETTO - Gene Prioritization in Java
GEPETTO (GEne Prioritization ExTended TOol)
GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein... -
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android-python2.7.3
Python2.7.3 for android
This is python2.7.3 which can be compiled using android-ndk By using python ,Its is possible to run lot of great application in android phone. At the time of writing I could run IPython, Isympy, Django etc on my android phone. This project only considering command-line binary builds. Not any GUI apps. -
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Matlab tool for plotting multi-channel biomedical signals. It is designed for researchers on both engineering and medicine who have to collaborate to visualize and analyze signals. It is the ideal tool to plot electroencephalogram (EEG), Foetal Heart Rate (FHR) and many other signals with the standard tools used in clinical routine.
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NeedlemanWunsch
Fast global sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align Global optimal sequence alignment using the Needleman-Wunsch algorithm. Aligns DNA, RNA, protein sequence and more! See our sister project local alignment using Smith-Waterman: http://sourceforge.net/projects/smithwaterman/ -
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trafo
trafo is a console-based "E-I" transformer calculator
trafo is a console-based "E-I" transformer calculator. It allows you to easily calculate all the necessary information to build an "E-I" transformer by only providing a few input parameters. This programs is for all of those who don't want to spend more time calculating transformers manually amd would like some automation. -
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Topographica
Simulation software for brain modelling
Topographica is a neural modeling package developed in a Human Brain Project grant from NIH. Topographica helps neuroscientists and computational scientists simulate and understand how topographic maps contribute to brain function. Topographica is now primarily maintained at github.com; see https://github.com/ioam/topographica for recent updates and releases. -
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Evrika
Science simulator and advanced calculator based on modules
Evrika is a science simulator and advanced calculator, which is based on modules. Modules are libraries containing definitions of concepts that can be used in the simulation. By definitions we mean properties, actions, reactions, etc. Evrika is used for creating both simulations and modules, so you can build your own module of elements, then use them to create virtual experiments and simulations. Also, you can make advanced calculations. Evrika is basically an executable that reads and... -
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Tcl binding to levmar library implementing Levenberg-Marquardt optimization algorithm often used in data fitting. Levmartcl is a standard Tcl extension providing command interface to levmar functionality. This library is only a wrapper of <levmar> which actually performs the work. See the <levmar> home site for details: http://www.ics.forth.gr/~lourakis/levmar/
