Search Results for "https file server" - Page 7
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Showing 274 open source projects for "https file server"
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Combenefit
Synergy analyses of drug and other other agent combinations
...Please cite as: "Di Veroli,G.Y. et al. (2016) Combenefit: an interactive platform for the analysis and visualization of drug combinations. Bioinformatics." (http://bioinformatics.oxfordjournals.org/content/early/2016/05/27/bioinformatics.btw230.abstract) Current version (2.021): https://sourceforge.net/projects/combenefit/files/Combenefit%202.02%20WIN_64%20%28PREFERRED%29/ Older version for 32-bit os: https://sourceforge.net/projects/combenefit/files/WIN_32/ Quick user's guide: https://sourceforge.net/projects/combenefit/files/Combenefit_v2.02_quick_guide_v1.03.pdf/download Examples: https://sourceforge.net/projects/combenefit/files/Examples/ Template file: https://sourceforge.net/projects/combenefit/files/REPLICATE_TEMPLATE.xls/download -
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...The program works with files in PDB format, but it also can read/generate GROMACS compatible formats such as XTC. The same project can be compiled as a GROMACS tool or as a standalone version. Installation instructions are provided in the INSTALL file of the project and in https://sourceforge.net/p/trjcavity/wiki/Home/#ffad If you need support using this tool (or report bugs), please post it in the discussion forum. Remarks: v2 runs in parallel and supports GROMACS v5.1+ series. If you want to continue on using GROMACS v4.x, please use trj_cavity_v1.1.
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smartblob
tiny code, html webcam game or plug brain in each blob, java server
...The physics and vision algorithm is half working in version 0.3.0. The gameplay is better experienced in 0.2 which is controlled with the mouse so you dont have enough freedom of movement compared to webcam. This small file contains its own source code including occamserver, a tiny general java server I built which I'll adjust to allow http streaming connections to stay open for faster ajax than a new web call each time. The reshaping and bouncing physics is by springs. -
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VCF Explorer
A desktop application for analyzing whole genome VCF files
he decreasing cost high-throughput technologies led to a number of sequencing projects consisting thousands of whole genomes. The paradigm shift from exome to whole genome brings a significant increase in the size of output files. Most of the existing tools which are developed to analyze exome files are not adequate for large VCF files produced by whole genome studies. In this work we present VCF-Explorer, a variant analysis software capable of handling large files. Efficient memory... -
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GNomEx
A Genomic LIMS and Data Repository
Our source code is now on GitHub: https://github.com/hci-gnomex/gnomex. Please refer to GitHub for the latest code. GNomEx is Genomic LIMS and Data Repository. It holds annotated experiments and downstream analysis and serves data tracks to popular genome browsers such as IGB, IGV, and UCSC genome browser. The LIMS handles all aspects of the experiment from order through results delivery. Experiment platforms supported include Illumina HiSeq, MiSeq, iScan, ABI Sanger sequencing,... -
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Asterix
Asterix is command line parser and Wireshark plugin for ASTERIX
...More about ASTERIX protocol you can find here: http://www.eurocontrol.int/services/asterix Source code is available at: https://github.com/CroatiaControlLtd/asterix -
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orbkit (Moved to Github)
A Modular Python Toolbox for Cross-Platform Post-Processing of Quantum
PLEASE NOTE ORBKIT HAS BEEN MOVED TO https://github.com/orbkit/orbkit orbkit is a parallel Python program package for post-processing wave function data extracted from output files of MOLPRO (Molden File Format), TURBOMOLE (AOMix file format), GAMESS-US, PROAIMS/AIMPAC (wfn/wfx file format), and Gaussian (Output File and Formatted Checkpoint File) output files. Futhermore, an interface to cclib, a parser for quantum chemical logfiles, is provided. ... -
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Fielddata Mgr
Land survey field crew data management for .RAW and .JOB file types.
...The program "Fielddata Mgr", is customized for the Rick survey department, in such that it supports up to 9 chiefs, each having their own folder in one location, 2 supervisers, each with a PC on the network, and access to a main server. Each day, the .RAW file is copied to the appropriate chiefs folder and when Fielddata Mgr is run, or the reload button is clicked, all .RAW files are listed along with a long list of all job folders existing in a designated location, and a short list of frequently accessed jobs that are selected from within the long list. When a .RAW file is selected, the contents are read, interpreted, and the results displayed within the program window. ... -
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Control Interface Victor 86C, Voltcraft
Control Voltcraft Power Supply and Victor 86C Multimeter
ANNOUNCEMENT Project has moved to a proprietary website! http://www.instruman.it Updated source code available at https://instruman.codeplex.com/ This is an interface used to program and control Voltcraft DPPS-32-15 Power Supply, and to log data from Victor 86C Multimeter. It's an all-in-one solution to use the two instruments at the same time for Scientific, Research and Study purposes. Features avaible are the following: -Victor 86C USB HID connection protocol -86C data reading and logging -COM port selection -Continuous reading of Voltage and Current -Continuous logging of Voltage and Current in a Chart with the option to export data to csv file -Possibility to set logging rate from 50 ms -Turn ON and OFF instrument -Set Voltage and Current -Set a custom voltage loop to play and reiterate -Reiteration possible in three ways: for a fixed time, for a fixed number of cycles and until the STOP button is pressed -
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Nets&Nuts
Communicating Vision PLC with Java - Linux server
This is a Java application which enables the communication among Vision V350 PLC and Linux server without using OPC server. In fact there are two applications: 1- TCP_Server which timely receives data sent from PLC 2- TCP_Client which implements the Unitronics ASCII communication protocol allowing an user read and write any PLC registers of Vision V350 model. -
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...The sourceforge git repository is not the working code repository, it is only a publishing/readonly code repository for this project. The working repository is actually a gerrit repository at https://source.oscartools.org:8080, once commits are reviewed and approved and merged into the trunk, they are automatically mirrored to the sourceforge git repository (usually with in seconds). SourceForge GIT issues have been resolved and all source code repositories are syncing with our gerrit server again (2013-05-08).
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Argunet
argument map editor for analyzing and visualizing complex debates
Argunet is a client-server software for computer-supported argument visualization (CSAV). Reconstructed debates are visualized as argument maps and can be shared through the Argunet Server. -
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mwetoolkit
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/ The Multiword Expressions toolkit aids in the automatic identification and extraction of multiword units in running text. These include idioms (kick the bucket), noun compounds (cable car), phrasal verbs (take off, give up), etc. Even though it focuses on multiword expresisons, the framework is quite complete and can also be useful in any corpus-based study in computational linguistics. The mwetoolkit can be... -
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bsclient
An interactive FTP-like command-line BaseSpace download client
bsclient is an interactive text-based client for browsing and downloading files from Illumina BaseSpace. It has a simple interface simliar to FTP and can be used to easily download files onto a remote server or in any situation when the web-based interface is not accessible or desirable. Please note that current development on this project has moved to GitHub: https://github.com/jvolkening/bsclient -
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UPDATE March 14, 2018 Repository and tracking officially moved to github. https://github.com/opticks-org/opticks Sourceforge mailing lists are still in use. Opticks is an open source remote sensing application and development framework.
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PNGwriter
Easy plotting of images pixel by pixel!
Frustrated because you want to output a high-quality image from your C++ program but haven't found an easy, direct and fast way? Try PNGwriter. Written with scientific simulations in mind, PNGwriter allows you to plot to a PNG image pixel by pixel. * * *README* * * This is the last PNGwriter release that will be hosted on SourceForge.net. Please use the following site: https://github.com/pngwriter/pngwriter/releases to find all versions of PNGwriter including and later than... -
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PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/MutationMapper) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/MutationMapper/releases/latest). Predict functional consequences of mutations identified from sanger sequencing.
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AEO-Light 1.1
Version 1.1 is no longer supported.
Version 1.1 is no longer supported. Please see the new version at https://usc-imi.github.io/aeo-light/ Description for 1.1 continues below: AEO-Light 1.1 is an open-source software application that takes a digital scan of motion picture film with optical sound tracks and directly reproduces the audio, producing as a result a synchronized sound film file. Funded by a grant from the National Endowment for the Humanities and by the University of South Carolina. -
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Universal Java Matrix Package
sparse and dense matrix, linear algebra, visualization, big data
The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large... -
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...Includes among others * a multiscale particle tracking algorithm [1] whose C++ implementation is optimised for 3D confocal data. Python implementation is more versatile (2D and 3D data). * a Leica file reader, * Steindhard bond orientational order calculation * a VTK file writer 1. Leocmach, M. & Tanaka, H. A novel particle tracking method with individual particle size measurement and its application to ordering in glassy hard sphere colloids. Soft Matter 9, 1447–1457 (2013). https://dx.doi.org/10.1039/C2SM27107A (http://arxiv.org/pdf/1301.7237.pdf)
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Ichnaea
Performance Timing Tools
...The Performance Modelling Timing Module, PMTM, is a library that wraps system timing calls to abstract these from code developers and aid portability. It also has functionality to store parameters and print those, along with the timing information to a comma separated variable file. The Performance Modelling Analysis Tool, PMAT, is coming soon. This is able to read in and store the outputs from PMTM and produce some graphs based on user-defined criteria. Documentation found in the Wiki. As of March 2015, main development has been switched to the UK Mini-Application Consortium Github page. Work on PMTM from the unreleased version 2.6.0 can be found here: https://github.com/UK-MAC/PMTM Work on PMAT version 3 will be commencing shortly here: https://github.com/UK-MAC/PMAT Tarballs of releases will continue to be available here. -
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SEWOL: Security-oriented Workflow Lib
Java Library for workflow handling
...It allows to specify the shape and content of process traces in terms of entries representing the execution of a specific workflow activity. Currently it supports plain text, Petrify, MXML and XES log file types. In order to specify security-related context information, SEWOL provides access control models such as access control lists (ACL) and role-based access control models (RBAC). SEWOL uses and encloses the following libraries: - TOVAL (http://sourceforge.net/p/toval), - JAGAL (http://sourceforge.net/p/jagal), - OpenXES (http://www.xes-standard.org/openxes/), - Spex (http://code.deckfour.org/Spex/) - Google Guava (https://github.com/google/guava), - xstream (http://xstream.codehaus.org/) and - graph-impl and visualization components of Jung 2 (http://jung.sourceforge.net/). ... -
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iChair is a powerful submission/review server software designed to help the program chair of a conference with: submission collection, assignment of articles to reviewers, review collection, discussions, mailing to authors and reviewers... Release 29 of iChair transitioned from SQLite2 to SQLite3 and can now run on PHP 5.4 and higher. Upgrading from a previous release of iChair will require you to delete all databases.
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Orthanc
Lightweight, RESTful DICOM server for healthcare and medical research
[2015-06-12] Orthanc has left SourceForge. All the downloads are now available directly from our official Website: http://www.orthanc-server.com/browse.php -
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vHDL Obfuscator GUI
vHDL Obfuscator is an small GUI to obfuscate and reformat HDL files
VHDL and Verilog HDL are standards languages for hardware description. Sometimes is necessary to share the source HDL file but maintaining a little level of control and protection of the intellectual property. This tool generate obfuscated code that is almost unreadable to humans, but is still readable to compilers and simulators. This tool use GHDL (https://sourceforge.net/projects/ghdl-updates/), HDLObf (https://sourceforge.net/projects/hdlobf/), Icarus Verilog (https://sourceforge.net/projects/iverilog/) and was created in Lazarus (http://www.lazarus-ide.org/)
