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The Lidy project is a small cross-platform library under LPGL licence, written in C language. It has been designed in order to facilitate the sparse matrices handling.
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Parallel Port Control Made Easy - parashell allows control of a PC parallel port (input and output) with simple command line arguments. The simplicity of these programs make it very easy to use in scripts. Control stepper motors, Relays, LEDs, etc...
Metmask has moved to github http://github.com/hredestig/metmask
Metmask is a tool written in python for managing chemical identifiers for metabolomics experiments. It can incorporate identifiers from local textfiles, several online databases, query PubChem and record all found associations in a local sqlite database.
Phylogenetic Representativeness is a method for estimating adequacy of taxon sampling for phylogenetic studies. Through a series of statistics generated by PhyRe, it is possible to evaluate taxon coverage within a given group.
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Spatio Temporal Toolkit is a pure Java "Conceptual" library released under LGPL License that is used to manipulate spatio temporal data-sets. This library is giving powerful boosts to data warehouse projects that envolves spatio-temporal data handling.
Simple use of javadbf (http://javadbf.sarovar.org) class. Allows import / export files from a Siemens Step7 project . Allow to put your logic files under SVN o similar (easy and fast!) NEW VERSION IS READY, NO CONFIGURATION NEED!
This tool is designed to solve generalized pattern matching problem, by which we only find a set of sub-patterns, ignoring the gaps in between the sub-patterns. This tool is extremely fast and also has good tolerance to errors.
The SELENA and RISe software tools are two packages to assist in computing earthquake damage scenarios. The damage probability for any specific structure follows the computation principles of HAZUS.
ROS repository for human-robot engagement package, developed at Worcester Polytechnic Institute. Currently contains ROS stack for recognizing and generating connection events. This work is supported by the NSF awards IIS-0811942 and IIS-1012083.
An R package for detailed inspection and analysis of LCMS data. An R package developed by Sukhdeep Singh at Department of Surgery and Cancer, Imperial College London,UK.
Implementation of the PowerWatershed algorithm (q=2) described in the following paper (ICCV 2009)
http://www.esiee.fr/~najmanl/papers/couprie2009iccv.pdf
qips is a software package for analyzing ChIP-seq ("Chromatin ImmunoPrecipitation on sequencing") data. It finds enriched regions of arbitrary lengths and is therefore especially suited for analyzing ChIP-seq of histone marks or polymerase.
Using the Mean Machine, even very large EEG data sets can be analyzed (artifact detection, evoked potentials, frequency analysis, ect.). It is a Matlab GUI application, which can also be run via the command line without GUI-support.
Common code developed by researchers in the Edwards Bioinformatics Group at SDSU. This code is free for everyone to use. It is our base code that we provide on an as-is basis. Please let us know if you use the code or have questions/comments
A branch-and-prune method to find all solutions to systems of nonlinear equations. The number of variables must equal the number of equations. The variables must have proper lower and upper bounds. The solver has an interface to the AMPL environment.
A weather-station control system for the AAG WSI-603 weather station and other 1-Wire based systems. Uses the OWFS 1-wire file system as the interface to 1-Wire system
Given low-density genotypes for pedigrees, and dense genotypes for some people in those pedigrees, computes high-density genotypes for some other people in those pedigrees. This reduces genotyping effort.
The CUDA wrapper library provides means for an efficient resource sharing and resource protection on multi-user GPU clusters.It implements the following functionality:
1) Virtualization of the physical GPU devices
2) Ensuring NUMA affinity for GPUs